ArticleJournal of integrative bioinformatics2022
ExceS-A: an exon-centric split aligner.
Article in Journal of integrative bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
3 citing papers in PubMed.
- Computational Analysis of Telomerase RNA Evolution inNon-coding RNA · 2026Article
- Article
- SimSpliceEvol2: alternative splicing-aware simulation of biological sequence evolution and transcript phylogenies.BMC bioinformatics · 2024Article
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2 authors.
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Abstract
Spliced alignments are a key step in the construction of high-quality homology-based annotations of protein sequences. The exon/intron structure, which is computed as part of spliced alignment procedures, often conveys important information for the distinguishing paralogous members of gene families. Here we present an exon-centric pipeline for spliced alignment that is intended in particular for applications that involve exon-by-exon comparisons of coding sequences. We show that the simple, blat-based approach has advantages over established tools in particular for genes with very large introns and applications to fragmented genome assemblies.
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