Evidence map›Paper›PMID 35254319›Full record

ArticleJournal of synchrotron radiation2022

Scanning structural mapping at the Life Science X-ray Scattering Beamline.

Lin Yang, Jiliang Liu, Shirish Chodankar, Stephen Antonelli, Jonathan DiFabio

Abstract read
In one paragraph

Article in Journal of synchrotron radiation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Muscle Diffraction at the Life Science X-ray Scattering Beamline.bioRxiv : the preprint server for biology · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Lin YangNational Synchrotron Light Source II, Brookhaven National Laboratory, 745 Brookhaven Avenue, Upton, NY 11973, USA.ORCID 0000-0003-1057-9194
Jiliang LiuNational Synchrotron Light Source II, Brookhaven National Laboratory, 745 Brookhaven Avenue, Upton, NY 11973, USA.
Shirish ChodankarNational Synchrotron Light Source II, Brookhaven National Laboratory, 745 Brookhaven Avenue, Upton, NY 11973, USA.
Stephen AntonelliNational Synchrotron Light Source II, Brookhaven National Laboratory, 745 Brookhaven Avenue, Upton, NY 11973, USA.
Jonathan DiFabioNational Synchrotron Light Source II, Brookhaven National Laboratory, 745 Brookhaven Avenue, Upton, NY 11973, USA.

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
A Simultaneous SAXS/WAXS Detector System for Solving Biological StructuresS10OD012331 · OD · STATE UNIVERSITY NEW YORK STONY BROOK · PI ALLAIRE, MARC · 2012 to 2012
$1.1M
National Institutes of Health, National Institute of General Medical Sciences P30GM133893NIGMS NIH HHS P30 GM133893NIH HHS S10 OD012331ODCDC CDC HHS S10 OD012331U.S. Department of Energy, Office of Science DE-SC0012704U.S. Department of Energy, Office of Science KP1605010
6 · The paper itself

Abstract

This work describes the instrumentation and software for microbeam scattering and structural mapping at the Life Science X-ray Scattering (LiX) beamline at NSLS-II. Using a two-stage focusing scheme, an adjustable beam size between a few micrometres and a fraction of a millimetre is produced at the sample position. Scattering data at small and wide angles are collected simultaneously on multiple Pilatus detectors. A recent addition of an in-vacuum Pilatus 900k detector, with the detector modules arranged in a C-shaped configuration, has improved the azimuthal angle coverage in the wide-angle data. As an option, fluorescence data can be collected simultaneously. Fly scans have been implemented to minimize the time interval between scattering patterns and to avoid unnecessary radiation damage to the sample. For weakly scattering samples, an in-vacuum sample environment has been developed here to minimize background scattering. Data processing for these measurements is highly sample-specific. To establish a generalized data process workflow, first the data are reduced to reciprocal coordinates at the time of data collection. The users can then quantify features of their choosing from these intermediate data and construct structural maps. As examples, results from in-vacuum mapping of onion epidermal cell walls and 2D tomographic sectioning of an intact poplar stem are presented.

Indexed as

Biological Science DisciplinesSynchrotronsScattering, Small AngleX-Ray DiffractionX-RaysimagingSAXS/WAXSstructural mapping

Identifiers

PMID35254319
PMCPMC8900859

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.