Evidence map›Paper›PMID 35254257›Full record

ArticleeLife2022

Large-scale orientational order in bacterial colonies during inward growth.

Mustafa Basaran, Y Ilker Yaman, Tevfik Can Yüce, Roman Vetter, Askin Kocabas

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Dissecting the physics of bacterial biofilms with agent-based simulations.Current opinion in solid state & materials science · 2025
    Article
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  5. ISME communications · 2025
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  12. Article
  13. Cell arrangement impacts metabolic activity and antibiotic tolerance inbioRxiv : the preprint server for biology · 2023
    Article
  14. Article
  15. Vertical growth dynamics of biofilms.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Article
  17. Stress anisotropy in confined populations of growing rods.Journal of the Royal Society, Interface · 2022
    Article
  18. Morphological instability and roughening of growing 3D bacterial colonies.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 4 countries.

Mustafa Basaran *Department of Physics, Koç University, Istanbul, Turkey.ORCID 0000-0002-1895-254X
Y Ilker Yaman *Department of Physics, Koç University, Istanbul, Turkey.ORCID 0000-0003-4094-616X
Tevfik Can YüceDepartment of Physics, Koç University, Istanbul, Turkey.ORCID 0000-0002-6888-2690
Roman VetterComputational Physics for Engineering Materials, ETH Zurich, Zurich, Switzerland.ORCID 0000-0003-2901-7036
Askin KocabasDepartment of Physics, Koç University, Istanbul, Turkey.ORCID 0000-0002-6930-1202
Koç University · TRETH Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During colony growth, complex interactions regulate the bacterial orientation, leading to the formation of large-scale ordered structures, including topological defects, microdomains, and branches. These structures may benefit bacterial strains, providing invasive advantages during colonization. Active matter dynamics of growing colonies drives the emergence of these ordered structures. However, additional biomechanical factors also play a significant role during this process. Here, we show that the velocity profile of growing colonies creates strong radial orientation during inward growth when crowded populations invade a closed area. During this process, growth geometry sets virtual confinement and dictates the velocity profile. Herein, flow-induced alignment and torque balance on the rod-shaped bacteria result in a new stable orientational equilibrium in the radial direction. Our analysis revealed that the dynamics of these radially oriented structures, also known as aster defects, depend on bacterial length and can promote the survival of the longest bacteria around localized nutritional hotspots. The present results indicate a new mechanism underlying structural order and provide mechanistic insights into the dynamics of bacterial growth on complex surfaces.

Indexed as

BacteriaModels, Biologicalactive matterbacterial alignmentB. subtilisE. colinemato-hydrodynamicsphysics of living systems

Identifiers

PMID35254257
PMCPMC8963879
OpenAlexW3156627854

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.