Evidence map›Paper›PMID 35252985›Full record

ArticleJACS Au2022

Investigating the Conformational Dynamics of a Y-Family DNA Polymerase during Its Folding and Binding to DNA and a Nucleotide.

Xiakun Chu, Zucai Suo, Jin Wang

Open access · goldAbstract read
In one paragraph

Article in JACS Au, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Xiakun ChuDepartment of Chemistry, State University of New York at Stony Brook, Stony Brook, New York 11794, United States.ORCID https://orcid.org/0000-0003-3166-7070
Zucai SuoDepartment of Biomedical Sciences, College of Medicine, Florida State University, Tallahassee, Florida 32306, United States.ORCID https://orcid.org/0000-0003-3871-3420
Jin WangDepartment of Chemistry, State University of New York at Stony Brook, Stony Brook, New York 11794, United States.ORCID https://orcid.org/0000-0002-2841-4913
State University of New York · USFlorida State University · US

Funding

Theoretical and experimental investigation of multi-domain protein folding and conformational dynamicsR01GM124177 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI WANG, JIN · 2018 to 2021
$1.8M
NIGMS NIH HHS R01 GM124177
6 · The paper itself

Abstract

During DNA polymerization, the Y-family DNA polymerases are capable of bypassing various DNA damage, which can stall the replication fork progression. It has been well acknowledged that the structures of the Y-family DNA polymerases have been naturally evolved to undertake this vital task. However, the mechanisms of how these proteins utilize their unique structural and conformational dynamical features to perform the translesion DNA synthesis are less understood. Here, we developed structure-based models to study the precatalytic DNA polymerization process, including DNA and nucleotide binding to DPO4, a paradigmatic Y-family polymerase from

Identifiers

PMID35252985
PMCPMC8889613
OpenAlexW4200171943

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.