Evidence map›Paper›PMID 35252879›Full record

ArticleNature computational science2021

A Poisson binomial-based statistical testing framework for comorbidity discovery across electronic health record datasets.

Gordon Lemmon, Sergiusz Wesolowski, Alex Henrie, Martin Tristani-Firouzi, Mark Yandell

Open access · greenAbstract read
In one paragraph

Article in Nature computational science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Gordon LemmonDepartment of Human Genetics, University of Utah, Salt Lake City, UT, USA.ORCID 0000-0002-8381-205X
Sergiusz WesolowskiDepartment of Human Genetics, University of Utah, Salt Lake City, UT, USA.
Alex HenrieDepartment of Human Genetics, University of Utah, Salt Lake City, UT, USA.
Martin Tristani-FirouziDivision of Pediatric Cardiology, University of Utah School of Medicine, Salt Lake City, UT, USA.ORCID 0000-0001-5916-442X
Mark YandellDepartment of Human Genetics, University of Utah, Salt Lake City, UT, USA.ORCID 0000-0002-9497-4505
University of Utah · US

Funding

Utah Center for Clinical and Translational ScienceUL1TR002538 · NCATS · UNIVERSITY OF UTAH · PI HESS, RACHEL, MAJERSIK, JENNIFER JUHL · 2018 to 2022
$26.0M
TRAINING IN CARDIOVASCULAR RESEARCHT32HL007576 · NHLBI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Stavros George Drakos, Robin M Shaw · 1985 to 2026
$10.6M
University of Utah Interdisciplinary Training Program in Computational Approaches to Diabetes and Metabolism ResearchT32DK110966 · NIDDK · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Karen Louise Eilbeck, Marcus Guy Pezzolesi · 2016 to 2026
$2.6M
From genomics to natural language processing: A protected environment for research computing in the health scienceS10OD021644 · OD · UNIVERSITY OF UTAH · PI CHEATHAM, THOMAS E. · 2017 to 2017
$494k
NCATS NIH HHS UL1 TR002538NHLBI NIH HHS T32 HL007576NIDDK NIH HHS T32 DK110966NIH HHS S10 OD021644
6 · The paper itself

Abstract

Discovering the concomitant occurrence of distinct medical conditions in a patient, also known as comorbidities, is a prerequisite for creating patient outcome prediction tools. Current comorbidity discovery applications are designed for small datasets and use stratification to control for confounding variables such as age, sex or ancestry. Stratification lowers false positive rates, but reduces power, as the size of the study cohort is decreased. Here we describe a Poisson binomial-based approach to comorbidity discovery (PBC) designed for big-data applications that circumvents the need for stratification. PBC adjusts for confounding demographic variables on a per-patient basis and models temporal relationships. We benchmark PBC using two datasets to compute comorbidity statistics on 4,623,841 pairs of potentially comorbid medical terms. The results of this computation are provided as a searchable web resource. Compared with current methods, the PBC approach reduces false positive associations while retaining statistical power to discover true comorbidities.

Identifiers

PMID35252879
PMCPMC8896515
OpenAlexW3205866799

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.