Evidence map›Paper›PMID 35252692›Full record

ArticleACS omega2022

In-Depth Serum Proteomics by DIA-MS with

Hironori Sato, Yuzaburo Inoue, Yusuke Kawashima, Daisuke Nakajima, Masaki Ishikawa, Ryo Konno, Ren Nakamura, Daigo Kato, Kanako Mitsunaga, Takeshi Yamamoto and 5 more

Open access · goldAbstract read
In one paragraph

Article in ACS omega, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Proteome Analysis of Serum Purified UsingInternational journal of molecular sciences · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 2 countries.

Hironori SatoDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.ORCID https://orcid.org/0000-0003-3217-3742
Yuzaburo InoueDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Yusuke KawashimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.ORCID https://orcid.org/0000-0002-9779-8199
Daisuke NakajimaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.ORCID https://orcid.org/0000-0003-3310-3762
Masaki IshikawaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Ryo KonnoDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Ren NakamuraDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.
Daigo KatoDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Kanako MitsunagaDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Takeshi YamamotoDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Akiko YamaideDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Minako TomiitaDepartment of Clinical Research, National Hospital Organization Shimoshizu National Hospital, Yotsukaido, Chiba 284-0003, Japan.ORCID https://orcid.org/0000-0002-5665-915X
Akira HoshiokaDepartment of Allergy and Rheumatology, Chiba Children's Hospital, Chiba, Chiba 266-0007, Japan.
Osamu OharaDepartment of Applied Genomics, Kazusa DNA Research Institute, Kisarazu, Chiba 292-0818, Japan.ORCID https://orcid.org/0000-0002-3328-9571
Naoki ShimojoCenter for Preventive Medical Sciences, Chiba University, Chiba, Chiba 263-8522, Japan.
Kazusa DNA Research Institute · JPChiba Hospital · JPChiba University · JPChiba Cancer Center · JPNational Hospital Organization · JPVirginia Mason Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In serum proteomics using mass spectrometry, the number of detectable proteins is reduced due to high-abundance proteins, such as albumin. However, recently developed data-independent acquisition mass spectrometry (DIA-MS) proteomics technology has made it possible to remarkably improve the number of proteins in a serum analysis by removing high-abundance proteins. Using this technology, we analyzed sera from patients with systemic juvenile idiopathic arthritis (sJIA), a rare pediatric disease. As a result, we identified 2727 proteins with a wide dynamic range derived from various tissue leakages. We also selected 591 proteins that differed significantly in their active phases. These proteins were involved in many inflammatory processes, and we also identified immunoproteasomes, which were not previously found in serum, suggesting that they may be involved in the pathogenesis of sJIA. A detailed high-depth DIA-MS proteomic analysis of serum may be useful for understanding the pathogenesis of sJIA and may provide clues for the development of new biomarkers.

Identifiers

PMID35252692
PMCPMC8892657
OpenAlexW4213302859

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.