Evidence map›Paper›PMID 35251744›Full record

ArticleWestern Pacific surveillance and response journal : WPSAR

Genomic surveillance of

Jeremiah Chilam, Silvia Argimón, Marilyn T Limas, Melissa L Masim, June M Gayeta, Marietta L Lagrada, Agnettah M Olorosa, Victoria Cohen, Lara T Hernandez, Benjamin Jeffrey and 8 more

Open access · diamondAbstract read
In one paragraph

Article in Western Pacific surveillance and response journal : WPSAR. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 3 countries.

Jeremiah ChilamAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Silvia ArgimónCentre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England.
Marilyn T LimasAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Melissa L MasimAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
June M GayetaAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Marietta L LagradaAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Agnettah M OlorosaAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Victoria CohenCentre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England.
Lara T HernandezAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Benjamin JeffreyCentre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England.
Khalil AbudahabCentre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England.
Charmian M HufanoAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Sonia B SiaAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Matthew T G HoldenUniversity of St Andrews School of Medicine, St Andrews, Scotland.
John StellingBrigham and Women's Hospital, Boston, MA, USA.
David M AanensenBig Data Institute, University of Oxford, Oxford, England.
Celia C CarlosAntimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Department of Health, Muntinlupa, Philippines.
Philippines Antimicrobial Resistance Surveillance Program
Research Institute for Tropical Medicine · PHBrigham and Women's Hospital · USUniversity of Oxford · GBUniversity of St Andrews · GB

Funding

Integrating the world's microbiology laboratories into a global microbial surveillance systemU01CA207167 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI STELLING, JOHN · 2016 to 2018
$1.3M
Medical Research Council MR/N019296/1NCI NIH HHS U01 CA207167
6 · The paper itself

Abstract

objective

methodsWe sequenced the whole genomes of 117

resultsCarbapenem resistance was mainly explained by acquisition of the class-D β-lactamase gene bla DISCUSSION: This is the first extensive genomic study of carbapenem-resistant

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAnti-Bacterial AgentsDrug Resistance, Multiple, BacterialGenomicsHumansMicrobial Sensitivity TestsMultilocus Sequence TypingPhilippinesAnti-Bacterial Agents

Identifiers

PMID35251744
PMCPMC8873916
OpenAlexW4220936764

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.