Evidence map›Paper›PMID 35249533›Full record

ArticleWorld journal of surgical oncology2022

Construction of a new immune-related lncRNA model and prediction of treatment and survival prognosis of human colon cancer.

Sicheng Liu, Xingyu Peng, Xun Wu, Fanqin Bu, Zhonglin Yu, Jinfeng Zhu, Chen Luo, Wenjun Zhang, Jiang Liu, Jun Huang

Abstract read
In one paragraph

Article in World journal of surgical oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

10 authors.

Sicheng LiuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Xingyu PengDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Xun WuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Fanqin BuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Zhonglin YuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Jinfeng ZhuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Chen LuoDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Wenjun ZhangDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Jiang LiuDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China.
Jun HuangDepartment of Gastrointestinal Surgery, Second Affiliated Hospital of Nanchang University, Nanchang, 330006, Jiangxi, China. huangjun0727@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAn increasing number of studies have shown that immune-related long noncoding RNAs (lncRNAs) do not require a unique expression level. This finding may help predict the survival and drug sensitivity of patients with colon cancer.

methodsWe retrieved original transcriptome and clinical data from The Cancer Genome Atlas (TCGA), sorted the data, differentiated mRNAs and lncRNAs, and then downloaded immune-related genes. Coexpression analysis predicted immune-related lncRNAs (irlncRNAs) and univariate analysis identified differentially expressed irlncRNAs (DEirlncRNAs). We have also amended the lasso pending region. Next, we compared the areas under the curve (AUCs), counted the Akaike information standard (AIC) value of the 3-year receiver operating characteristic (ROC) curve, and determined the cutoff point to establish the best model to differentiate the high or low disease risk group of colon cancer patients.

resultsWe reevaluated the patients regarding the survival rate, clinicopathological features, tumor-infiltrating immune cells, immunosuppressive biomarkers, and chemosensitivity. A total of 155 irlncRNA pairs were confirmed, 31 of which were involved in the Cox regression model. After the colon cancer patients were regrouped according to the cutoff point, we could better distinguish the patients based on adverse survival outcomes, invasive clinicopathological features, the specific tumor immune cell infiltration status, high expression of immunosuppressive biomarkers, and low chemosensitivity.

conclusionsIn this study, we established a characteristic model by pairing irlncRNAs to better predict the survival rate, chemotherapy efficacy, and prognostic value of patients with colon cancer.

Indexed as

Colonic NeoplasmsRNA, Long NoncodingBiomarkers, TumorHumansPrognosisSurvival RateTranscriptomeBiomarkers, TumorRNA, Long NoncodingColon cancerImmunotherapylncRNATumor-infiltrating immune cell

Identifiers

PMID35249533
PMCPMC8900415

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.