Evidence map›Paper›PMID 35249124›Full record

ArticlePlant cell reports2022

Comparative transcriptome analysis of pollen and anther wall reveals novel insights into the regulatory mechanisms underlying anther wall development and its dehiscence in rice.

Woo-Jong Hong, Su Kyoung Lee, Seok-Hui Kim, Yu-Jin Kim, Sunok Moon, Eui-Jung Kim, Jeniffer Silva, Ki-Hong Jung

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Woo-Jong Hong *Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea.
Su Kyoung Lee *Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea.
Seok-Hui Kim *Graduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea.
Yu-Jin KimDepartment of Life Science and Environmental Biochemistry, Life and Industry Convergence Research Institute, Pusan National University, Miryang, 50463, South Korea.
Sunok MoonGraduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea.
Eui-Jung KimGraduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea.
Jeniffer SilvaDepartment of Research and Development, The Bridge Biofoundry, Ciudad del Saber, Clayton, 0843-03081, Panama.
Ki-Hong JungGraduate School of Biotechnology & Crop Biotech Institute, Kyung Hee University, Yongin, 17104, South Korea. khjung2010@khu.ac.kr.ORCID http://orcid.org/0000-0003-0427-5901
Kyung Hee University · KRCity of Knowledge · PAPusan National University · KR

Funding

National Research Foundation of Korea NRF-2021M3E5E6025387National Research Foundation of Korea NRF-2021R1C1C2091377Rural Development Administration PJ01492703
6 · The paper itself

Abstract

To further understand the regulatory mechanism for anther dehiscence in rice, we carried out transcriptome analysis for the following two tissues: the anther wall and pollen at the anthesis stage. With the anatomical meta-expression data, in addition to these tissues, the differentially expressed genes (DEGs) between the two tissues were further refined to identify 1,717 pollen-preferred genes and 534 anther wall-preferred genes. A GUS transgenic line and RT-qPCR analysis for anther wall-preferred genes supported the fidelity of our gene candidates for further analysis. The refined DEGs were functionally classified through Gene Ontology (GO) enrichment and MapMan analyses. Through the analysis of cis-acting elements and alternative splicing variants, we also suggest the feature of regulatory sequences in promoter regions for anther wall-preferred expression and provide information of the unique splicing variants in anther wall. Subsequently, it was found that hormone signaling and the resulting transcriptional regulation pathways may play an important role in anther dehiscence and anther wall development. Our results could provide useful insights into future research to broaden the molecular mechanism of anther dehiscence or anther wall development in rice.

Indexed as

OryzaFlowersGene Expression ProfilingGene Expression Regulation, PlantPlant ProteinsPollenPlant ProteinsAnther wallDehiscenceProductivityRiceTranscriptome analysis

Identifiers

PMID35249124
OpenAlexW4220980536

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.