Evidence map›Paper›PMID 35247970›Full record

ArticleBMC plant biology2022

Linking genome wide RNA sequencing with physio-biochemical and cytological responses to catalogue key genes and metabolic pathways for alkalinity stress tolerance in lentil (Lens culinaris Medikus).

Dharmendra Singh, Chandan Kumar Singh, Jyoti Taunk, Kishor Gaikwad, Vijayata Singh, Satish Kumar Sanwal, Sourabh Karwa, Deepti Singh, Parbodh Chander Sharma, Rajendra Kumar Yadav and 1 more

Open access · goldAbstract readComparative Study
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
3.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Dharmendra SinghDivision of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. dharmendrapbg@rediffmail.com.
Chandan Kumar SinghDivision of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Jyoti TaunkDivision of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India.
Kishor GaikwadICAR-National Institute of Plant Biotechnology, 110012, New Delhi, India.
Vijayata SinghDivision of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Satish Kumar SanwalDivision of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Sourabh KarwaDivision of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India.
Deepti SinghDepatment of Botany, Meerut College, 250001, Meerut, India.
Parbodh Chander SharmaDivision of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Rajendra Kumar YadavDepartment of Genetics and Plant Breeding, Chandra Shekhar Azad University of Agriculture and Technology, 208002, Kanpur, India.
Madan PalDivision of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India. madanpal@yahoo.com.
Indian Agricultural Research Institute · INCentral Soil Salinity Research Institute · INChaudhary Charan Singh University · INChandra Shekhar Azad University of Agriculture and Technology · INNational Research Centre on Plant Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlkaline soils cause low productivity in crop plants including lentil. Alkalinity adaptation strategies in lentil were revealed when morpho-anatomical and physio-biochemical observations were correlated with transcriptomics analysis in tolerant (PDL-1) and sensitive (L-4076) cultivars at seedling stage.

resultsPDL-1 had lesser salt injury and performed better as compared to L-4076. Latter showed severe wilting symptoms and higher accumulation of Na

conclusionsPhyto-hormones biosynthesis-predominantly through ABA signalling, and secondary metabolism are the most potent pathways for alkalinity stress tolerance in lentil. Cultivar PDL-1 exhibited high tolerance towards alkalinity stress and can be used in breeding programmes for improving lentil production under alkalinity stress conditions.

Indexed as

Sequence Analysis, RNAAbscisic AcidCrops, AgriculturalGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGenetic VariationGenome-Wide Association StudyGenotypeLens PlantMetabolic Networks and PathwaysPlant RootsSalt StressSalt ToleranceAbscisic AcidAbscisic acidAlkalinity stressChromosome lesionsDehydrinEpigeneticsLentilSecondary metabolites

Identifiers

PMID35247970
PMCPMC8897830
OpenAlexW4220800945

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.