Evidence map›Paper›PMID 35247927›Full record

ArticleClinical cancer research : an official journal of the American Association for Cancer Research2022

Single-cell Characterization of the Cellular Landscape of Acral Melanoma Identifies Novel Targets for Immunotherapy.

Jiannong Li, Inna Smalley, Zhihua Chen, Jheng-Yu Wu, Manali S Phadke, Jamie K Teer, Thanh Nguyen, Florian A Karreth, John M Koomen, Amod A Sarnaik and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Clinical cancer research : an official journal of the American Association for Cancer Research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 93 citations in OpenAlex.

  1. Trial
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  5. Depletion of the RNA-Editing Enzyme ADAR1 Invigorates the Antitumor Immunity of NK Cells.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Review
  7. SPP1Cell death & disease · 2026
    Article
  8. Review
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  15. Immune checkpoint molecules and spatial transcriptome profiles according to BRAF status in acral melanoma.Journal of the European Academy of Dermatology and Venereology : JEADV · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Single-Cell Transcriptomic Landscape Deciphers Intratumoral Heterogeneity and Subtypes of Acral and Mucosal Melanomas.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 1 institution in 1 country.

Jiannong Li *The Department of Biostatistics and Bioinformatics, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Inna Smalley *The Department of Tumor Biology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-6796-9145
Zhihua ChenThe Department of Biostatistics and Bioinformatics, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Jheng-Yu WuThe Department of Tumor Biology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Manali S PhadkeThe Department of Tumor Biology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Jamie K TeerThe Department of Biostatistics and Bioinformatics, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0003-4513-0282
Thanh NguyenThe Department of Biostatistics and Bioinformatics, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Florian A KarrethThe Department of Molecular Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-2350-9809
John M KoomenThe Department of Molecular Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-3818-1762
Amod A SarnaikThe Department of Cutaneous Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Jonathan S ZagerThe Department of Cutaneous Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-6886-4468
Nikhil I KhushalaniThe Department of Cutaneous Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.
Ahmad A TarhiniThe Department of Cutaneous Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-3193-9702
Vernon K SondakThe Department of Cutaneous Oncology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0003-1090-484X
Paulo C RodriguezThe Department of Immunology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0001-7480-6566
Jane L MessinaThe Department of Immunology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0002-0332-0224
Y Ann ChenThe Department of Biostatistics and Bioinformatics, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0003-1468-3490
Keiran S M SmalleyThe Department of Tumor Biology, The Moffitt Cancer Center & Research Institute, Tampa, Florida.ORCID 0000-0003-1089-9307
Moffitt Cancer Center · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Functional reprogramming of tumor-MDSC through antibody-based therapies targeting Notch ligandsR01CA233512 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI RODRIGUEZ, PAULO CESAR · 2019 to 2023
$2.0M
NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA233512
6 · The paper itself

Abstract

purposeAcral melanoma is a rare subtype of melanoma that arises on the non-hair-bearing skin of the palms, soles, and nail beds. In this study, we used single-cell RNA sequencing (scRNA-seq) to map the transcriptional landscape of acral melanoma and identify novel immunotherapeutic targets. EXPERIMENTAL

designWe performed scRNA-seq on nine clinical specimens (five primary, four metastases) of acral melanoma. Detailed cell type curation was performed, the immune landscapes were mapped, and key results were validated by analysis of The Cancer Genome Atlas (TCGA) and single-cell datasets. Cell-cell interactions were inferred and compared with those in nonacral cutaneous melanoma.

resultsMultiple phenotypic subsets of T cells, natural killer (NK) cells, B cells, macrophages, and dendritic cells with varying levels of activation/exhaustion were identified. A comparison between primary and metastatic acral melanoma identified gene signatures associated with changes in immune responses and metabolism. Acral melanoma was characterized by a lower overall immune infiltrate, fewer effector CD8 T cells and NK cells, and a near-complete absence of γδ T cells compared with nonacral cutaneous melanomas. Immune cells associated with acral melanoma exhibited expression of multiple checkpoints including PD-1, LAG-3, CTLA-4, V-domain immunoglobin suppressor of T cell activation (VISTA), TIGIT, and the Adenosine A2A receptor (ADORA2). VISTA was expressed in 58.3% of myeloid cells and TIGIT was expressed in 22.3% of T/NK cells.

conclusionsAcral melanoma has a suppressed immune environment compared with that of cutaneous melanoma from nonacral skin. Expression of multiple, therapeutically tractable immune checkpoints were observed, offering new options for clinical translation.

Indexed as

MelanomaNeoplasms, Second PrimarySkin NeoplasmsCutaneous Malignant MelanomaHumansImmunologic FactorsImmunotherapySkinImmunologic Factors

Identifiers

PMID35247927
PMCPMC9106889
OpenAlexW4220969302

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.