Evidence map›Paper›PMID 35247316›Full record

ArticleDevelopmental cell2022

The evolutionarily conserved arginyltransferase 1 mediates a pVHL-independent oxygen-sensing pathway in mammalian cells.

Balaji T Moorthy, Chunhua Jiang, Devang M Patel, Yuguang Ban, Corin R O'Shea, Akhilesh Kumar, Tan Yuan, Michael D Birnbaum, Aldrin V Gomes, Xi Chen and 4 more

Open access · greenAbstract read
In one paragraph

Article in Developmental cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Reconstitution of the Arginyltransferase (ATE1) Iron-Sulfur Cluster.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  9. Assaying Arginylation Activity in Cell Lysates Using a Fluorescent Reporter.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Balaji T MoorthyDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Chunhua JiangDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Devang M PatelDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Yuguang BanDepartment of Public Health Sciences, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA; Sylvester Comprehensive Cancer Center, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Corin R O'SheaDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Akhilesh KumarDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Tan YuanDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Michael D BirnbaumDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Aldrin V GomesDepartment of Neurobiology, Physiology, and Behavior, Department of Physiology and Membrane Biology, University of California, Davis, Davis, CA 95616, USA.
Xi ChenDepartment of Public Health Sciences, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA; Sylvester Comprehensive Cancer Center, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Flavia FontanesiDepartment of Biochemistry & Molecular Biology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Theodore J LampidisDepartment of Cell Biology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA; Sylvester Comprehensive Cancer Center, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Antoni BarrientosDepartment of Neurology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA; Department of Biochemistry & Molecular Biology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA.
Fangliang ZhangDepartment of Molecular & Cellular Pharmacology, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA; Sylvester Comprehensive Cancer Center, University of Miami Leonard M. Miller School of Medicine, Miami, FL 33136, USA. Electronic address: fzhang2@miami.edu.
University of Miami · USSylvester Comprehensive Cancer Center · USUniversity of California, Davis · US

Funding

Mitochondrial Biogenesis in Health and DiseaseR35GM118141 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI BARRIENTOS, ANTONI · 2016 to 2025
$8.9M
Oxidative stress response and metabolic reprogramming by protein posttranslational arginylationR01GM138557 · NIGMS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI ZHANG, FANGLIANG · 2020 to 2023
$1.3M
NIGMS NIH HHS R01 GM138557NIGMS NIH HHS R35 GM118141
6 · The paper itself

Abstract

The response to oxygen availability is a fundamental process concerning metabolism and survival/death in all mitochondria-containing eukaryotes. However, the known oxygen-sensing mechanism in mammalian cells depends on pVHL, which is only found among metazoans but not in other species. Here, we present an alternative oxygen-sensing pathway regulated by ATE1, an enzyme ubiquitously conserved in eukaryotes that influences protein degradation by posttranslational arginylation. We report that ATE1 centrally controls the hypoxic response and glycolysis in mammalian cells by preferentially arginylating HIF1α that is hydroxylated by PHD in the presence of oxygen. Furthermore, the degradation of arginylated HIF1α is independent of pVHL E3 ubiquitin ligase but dependent on the UBR family proteins. Bioinformatic analysis of human tumor data reveals that the ATE1/UBR and pVHL pathways jointly regulate oxygen sensing in a transcription-independent manner with different tissue specificities. Phylogenetic analysis suggests that eukaryotic ATE1 likely evolved during mitochondrial domestication, much earlier than pVHL.

Indexed as

AminoacyltransferasesOxygenAnimalsHumansMammalsPhylogenyProteolysisAminoacyltransferasesarginyltransferaseOxygenArginylationarginyltransferaseATE1degradationglycolysisHIF1αhypoxic signalingoxygen sensingposttranslational protein modificationWarburg effect

Identifiers

PMID35247316
PMCPMC8957288
OpenAlexW4214823870

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.