Evidence map›Paper›PMID 35246928›Full record

ArticleMolecular plant pathology2022

Identification of novel virulence factors in Erwinia amylovora through temporal transcriptomic analysis of infected apple flowers under field conditions.

Jeffrey K Schachterle, Kristi Gdanetz, Ishani Pandya, George W Sundin

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Frontiers in plant science · 2026
    Review
  5. Efficacy ofMicrobiology spectrum · 2025
    Article
  6. Article
  7. Review
  8. Evaluation of pathogenicity variation between twoFrontiers in microbiology · 2025
    Article
  9. Single-Cell Detection ofSensors (Basel, Switzerland) · 2023
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jeffrey K SchachterleGenetics and Genome Sciences Program, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-6506-2398
Kristi GdanetzDepartment of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-8916-7602
Ishani PandyaDepartment of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, MI, USA.
George W SundinGenetics and Genome Sciences Program, Michigan State University, East Lansing, MI, USA.ORCID 0000-0003-4078-8368
Michigan State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The enterobacterial pathogen Erwinia amylovora uses multiple virulence-associated traits to cause fire blight, a devastating disease of apple and pear trees. Many virulence-associated phenotypes have been studied that are critical for virulence and pathogenicity. Despite the in vitro testing that has revealed how these systems are transcriptionally regulated, information on when and where in infected tissues these genes are being expressed is lacking. Here, we used a high-throughput sequencing approach to characterize the transcriptome of E. amylovora during disease progression on apple flowers under field infection conditions. We report that type III secretion system genes and flagellar genes are strongly co-expressed. Likewise, genes involved in biosynthesis of the exopolysaccharide amylovoran and sorbitol utilization had similar expression patterns. We further identified a group of 16 genes whose expression is increased and maintained at high levels throughout disease progression across time and tissues. We chose five of these genes for mutational analysis and observed that deletion mutants lacking these genes all display reduced symptom development on apple shoots. Furthermore, these induced genes were over-represented for genes involved in sulphur metabolism and cycling, suggesting the possibility of an important role for maintenance of oxidative homeostasis during apple flower infection.

Indexed as

Erwinia amylovoraMalusDisease ProgressionFlowersPlant DiseasesTranscriptomeVirulence FactorsVirulence FactorsdsbAfire blightflower transcriptomeiscStpxvirulence expression

Identifiers

PMID35246928
PMCPMC9104256
OpenAlexW4220982549

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.