Evidence map›Paper›PMID 35245322›Full record

ArticlePloS one2022

Core motifs predict dynamic attractors in combinatorial threshold-linear networks.

Caitlyn Parmelee, Samantha Moore, Katherine Morrison, Carina Curto

Abstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
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  7. Article
  8. Sequential Attractors in Combinatorial Threshold-Linear Networks.SIAM journal on applied dynamical systems · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Caitlyn ParmeleeMathematics Department, Keene State College, Keene, NH, United States of America.ORCID 0000-0002-3448-9911
Samantha MooreDepartment of Mathematics, University of North Carolina at Chapel Hill, State College, PA, United States of America.ORCID 0000-0003-3016-3188
Katherine MorrisonSchool of Mathematical Sciences, University of Northern Colorado, Greeley, CO, United States of America.
Carina CurtoDepartment of Mathematics, The Pennsylvania State University, University Park, PA, United States of America.ORCID 0000-0001-9849-3592

Funding

Emergent dynamics from network connectivity: a minimal modelR01EB022862 · NIBIB · PENNSYLVANIA STATE UNIVERSITY, THE · PI CURTO, CARINA · 2016 to 2018
$1.1M
CRCNS: Circuit dynamics in zebrafish larvae: mechanisms, modulation, and mathematical modeling of network topology and attractor dynamicsR01NS120581 · NINDS · PENNSYLVANIA STATE UNIVERSITY, THE · PI CURTO, CARINA · 2020 to 2023
$776k
NIBIB NIH HHS R01 EB022862NINDS NIH HHS R01 NS120581
6 · The paper itself

Abstract

Combinatorial threshold-linear networks (CTLNs) are a special class of inhibition-dominated TLNs defined from directed graphs. Like more general TLNs, they display a wide variety of nonlinear dynamics including multistability, limit cycles, quasiperiodic attractors, and chaos. In prior work, we have developed a detailed mathematical theory relating stable and unstable fixed points of CTLNs to graph-theoretic properties of the underlying network. Here we find that a special type of fixed points, corresponding to core motifs, are predictive of both static and dynamic attractors. Moreover, the attractors can be found by choosing initial conditions that are small perturbations of these fixed points. This motivates us to hypothesize that dynamic attractors of a network correspond to unstable fixed points supported on core motifs. We tested this hypothesis on a large family of directed graphs of size n = 5, and found remarkable agreement. Furthermore, we discovered that core motifs with similar embeddings give rise to nearly identical attractors. This allowed us to classify attractors based on structurally-defined graph families. Our results suggest that graphical properties of the connectivity can be used to predict a network's complex repertoire of nonlinear dynamics.

Indexed as

Nonlinear Dynamics

Identifiers

PMID35245322
PMCPMC8896682

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.