Evidence map›Paper›PMID 35245110›Full record

ArticleScience advances2022

Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing.

Igor Stevanovski, Sanjog R Chintalaphani, Hasindu Gamaarachchi, James M Ferguson, Sandy S Pineda, Carolin K Scriba, Michel Tchan, Victor Fung, Karl Ng, Andrea Cortese and 11 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed, 1 pooled it
17.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 1 synthesis or guideline pooled it, 177 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Confirmatory Molecular Diagnosis ofJournal of clinical neurology (Seoul, Korea) · 2026
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Genetic analysis of neurodegenerative diseases.The Journal of clinical investigation · 2026
    Review

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 3 countries.

Igor StevanovskiKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0002-7713-1979
Sanjog R ChintalaphaniKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0002-8106-5011
Hasindu GamaarachchiKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0002-9034-9905
James M FergusonKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0002-6192-6937
Sandy S PinedaGarvan-Weizmann Centre for Cellular Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0002-9003-0101
Carolin K ScribaHarry Perkins Institute of Medical Research, University of Western Australia, Nedlands, WA, Australia.
Michel TchanWestmead Hospital, Westmead, NSW, Australia and Sydney Medical School, The University of Sydney, NSW, Australia.ORCID 0000-0001-9700-7898
Victor FungWestmead Hospital, Westmead, NSW, Australia and Sydney Medical School, The University of Sydney, NSW, Australia.ORCID 0000-0003-3085-2282
Karl NgDepartment of Neurology, Royal North Shore Hospital and The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0001-7973-3773
Andrea CorteseNeuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK.
Henry HouldenNeuromuscular Diseases, UCL Queen Square Institute of Neurology, London, UK.ORCID 0000-0002-2866-7777
Carol Dobson-StoneThe University of Sydney, Brain and Mind Centre and School of Medical Sciences, Faculty of Medicine and Health, Camperdown, NSW, Australia.ORCID 0000-0002-2211-0257
Lauren FitzpatrickThe University of Sydney, Brain and Mind Centre and School of Medical Sciences, Faculty of Medicine and Health, Camperdown, NSW, Australia.
Glenda HallidayThe University of Sydney, Brain and Mind Centre and School of Medical Sciences, Faculty of Medicine and Health, Camperdown, NSW, Australia.ORCID 0000-0003-0422-8398
Gianina RavenscroftHarry Perkins Institute of Medical Research, University of Western Australia, Nedlands, WA, Australia.
Mark R DavisHarry Perkins Institute of Medical Research, University of Western Australia, Nedlands, WA, Australia.ORCID 0000-0002-0626-9030
Nigel G LaingHarry Perkins Institute of Medical Research, University of Western Australia, Nedlands, WA, Australia.ORCID 0000-0001-5111-3732
Avi FellnerKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0001-5354-9134
Marina KennersonNorthcott Neuroscience Laboratory, ANZAC Research Institute, Sydney, NSW, Australia.ORCID 0000-0003-3332-5074
Kishore R KumarKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0003-3482-6962
Ira W DevesonKinghorn Centre for Clinical Genomics, Garvan Institute of Medical Research, Sydney, NSW, Australia.ORCID 0000-0003-3861-0472
Garvan Institute of Medical Research · AUThe University of Sydney · AUThe University of Western Australia · AUNational Hospital for Neurology and Neurosurgery · GBWestmead Hospital · AURoyal North Shore Hospital · AU

Funding

Medical Research Council MR/T001712/1
6 · The paper itself

Abstract

More than 50 neurological and neuromuscular diseases are caused by short tandem repeat (STR) expansions, with 37 different genes implicated to date. We describe the use of programmable targeted long-read sequencing with Oxford Nanopore's ReadUntil function for parallel genotyping of all known neuropathogenic STRs in a single assay. Our approach enables accurate, haplotype-resolved assembly and DNA methylation profiling of STR sites, from a list of predetermined candidates. This correctly diagnoses all individuals in a small cohort (

Indexed as

Nanopore SequencingAllelesHigh-Throughput Nucleotide SequencingHumansMicrosatellite RepeatsSequence Analysis, DNA

Identifiers

PMID35245110
PMCPMC8896783
OpenAlexW4220941267

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.