Evidence map›Paper›PMID 35241669›Full record

ArticleNature communications2022

Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.

Mikel García-Alija, Jonathan J Du, Izaskun Ordóñez, Asier Diz-Vallenilla, Alicia Moraleda-Montoya, Nazneen Sultana, Chau G Huynh, Chao Li, Thomas Connor Donahue, Lai-Xi Wang and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Adaptation ofmSystems · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Mikel García-Alija *Structural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, 48903, Barakaldo, Bizkaia, Spain.
Jonathan J Du *Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Izaskun OrdóñezStructural Glycobiology Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building 801A, 48160, Derio, Spain.
Asier Diz-VallenillaStructural Glycobiology Laboratory, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building 801A, 48160, Derio, Spain.
Alicia Moraleda-MontoyaStructural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, 48903, Barakaldo, Bizkaia, Spain.
Nazneen SultanaDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.ORCID http://orcid.org/0000-0001-9866-4443
Chau G HuynhDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Chao LiDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA.ORCID http://orcid.org/0000-0002-8090-2017
Thomas Connor DonahueDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA.
Lai-Xi WangDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA.ORCID http://orcid.org/0000-0003-4293-5819
Beatriz TrastoyStructural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, 48903, Barakaldo, Bizkaia, Spain. beatriz.trastoy@gmail.com.ORCID http://orcid.org/0000-0002-2178-732X
Eric J SundbergDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA. eric.sundberg@emory.edu.ORCID http://orcid.org/0000-0003-0478-3033
Marcelo E GuerinStructural Glycobiology Laboratory, Biocruces Bizkaia Health Research Institute, Cruces University Hospital, 48903, Barakaldo, Bizkaia, Spain. mrcguerin@gmail.com.ORCID http://orcid.org/0000-0001-9524-3184
Emory University · USBioCruces Health research Institute · ESUniversity of Maryland, College Park · USCIC bioGUNE · ESIkerbasque · ES

Funding

Rationalizing glycoengineering strategies for immunotherapeutic antibodiesR01AI149297 · NIAID · EMORY UNIVERSITY · PI JEFFREY Victor RAVETCH, ERIC JOHN SUNDBERG · 2020 to 2026
$3.7M
Synthesis and Function of Antibody Fc Domain GlycoformsR01GM096973 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI WANG, LAI-XI · 2011 to 2020
$2.4M
NIAID NIH HHS R01 AI149297NIGMS NIH HHS R01 GM096973
6 · The paper itself

Abstract

Bacteria produce a remarkably diverse range of glycoside hydrolases to metabolize glycans from the environment as a primary source of nutrients, and to promote the colonization and infection of a host. Here we focus on EndoE, a multi-modular glycoside hydrolase secreted by Enterococcus faecalis, one of the leading causes of healthcare-associated infections. We provide X-ray crystal structures of EndoE, which show an architecture composed of four domains, including GH18 and GH20 glycoside hydrolases connected by two consecutive three α-helical bundles. We determine that the GH20 domain is an exo-β-1,2-N-acetylglucosaminidase, whereas the GH18 domain is an endo-β-1,4-N-acetylglucosaminidase that exclusively processes the central core of complex-type or high-mannose-type N-glycans. Both glycoside hydrolase domains act in a concerted manner to process diverse N-glycans on glycoproteins, including therapeutic IgG antibodies. EndoE combines two enzyme domains with distinct functions and glycan specificities to play a dual role in glycan metabolism and immune evasion.

Indexed as

AcetylglucosaminidaseGlycoside HydrolasesEnterococcus faecalisMannosePolysaccharidesAcetylglucosaminidaseGlycoside HydrolasesMannosePolysaccharides

Identifiers

PMID35241669
PMCPMC8894350
OpenAlexW4221088027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.