Evidence map›Paper›PMID 35241661›Full record

ArticleNature communications2022

Antibody escape and global spread of SARS-CoV-2 lineage A.27.

Tamara Kaleta, Lisa Kern, Samuel Leandro Hong, Martin Hölzer, Georg Kochs, Julius Beer, Daniel Schnepf, Martin Schwemmle, Nena Bollen, Philipp Kolb and 23 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
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  9. Dispersal history of SARS-CoV-2 in Galicia, Spain.Journal of medical virology · 2024
    Article
  10. Article
  11. Observational
  12. Dispersal history of SARS-CoV-2 in Galicia, Spain.medRxiv : the preprint server for health sciences · 2024
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Tamara Kaleta *Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Lisa Kern *Institute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Samuel Leandro Hong *Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000, Leuven, Belgium.ORCID http://orcid.org/0000-0001-6354-4943
Martin HölzerMethodology and Research Infrastructure, Bioinformatics, Robert Koch Institute, Berlin, Germany.
Georg KochsInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0003-0187-559X
Julius BeerInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Daniel SchnepfInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-7528-981X
Martin SchwemmleInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-2972-6855
Nena BollenDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000, Leuven, Belgium.
Philipp KolbInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0001-7935-217X
Magdalena HuberInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Svenja UlfertsInstitute of Experimental and Clinical Pharmacology and Toxicology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-6605-8163
Sebastian WeigangInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.ORCID http://orcid.org/0000-0002-8415-6920
Gytis DudasGothenburg Global Biodiversity Centre, Carl Skottsbergs gata 22B, 413 19, Gothenburg, Sweden.ORCID http://orcid.org/0000-0002-0227-4158
Alice WittigMethodology and Research Infrastructure, Bioinformatics, Robert Koch Institute, Berlin, Germany.ORCID http://orcid.org/0000-0002-0578-8752
Lena JakiInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany.
Abdou PadaneInstitut de Recherche en Santé, de Surveillance Epidémiologique et de Formation (IRESSEF), Rufisque, Senegal.
Adamou LagareCentre de Recherche Médicale et Sanitaire (CERMES), 634 Bld de la Nation, BP:10887, YN034, Niamey, Niger.
Mounerou SalouLaboratoire de Biologie Moléculaire et d'Immunologie, Département des Sciences Fondamentales, Université de Lomé, Lomé, Togo.
Egon Anderson OzerCenter for Pathogen Genomics and Microbial Evolution, Institute for Global Health, Northwestern University Feinberg School of Medicine, Chicago, IL, 60611, USA.ORCID http://orcid.org/0000-0002-7131-3691
Ndodo NnaemekaNational Reference Laboratory, Nigeria Centre for Disease Control, Abuja, Nigeria.
John Kofi OdoomDepartment of Virology, Noguchi Memorial Institute for Medical Research, University of Ghana, Legon, Accra, Ghana.
Robert RutayisireRwanda National Joint Task Force COVID-19, Rwanda Biomedical Centre, Ministry of Health, Kigali, Rwanda.
Alia BenkahlaLaboratory of BioInformatics bioMathematics, and bioStatistics (BIMS), Institut Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.
Chantal Akoua-KoffiLaboratoire Central, Centre Hospitalier et Universitaire de Bouaké, Bouaké, Côte d'Ivoire.
Abdoul-Salam OuedraogoDepartment of Bacteriology and Virology, Souro Sanou University Hospital, Bobo-Dioulasso, Burkina Faso.
Etienne Simon-LorièreG5 Evolutionary Genomics of RNA Viruses, Department of Virology, Institut Pasteur, Paris, France.ORCID http://orcid.org/0000-0001-8420-7743
Vincent EnoufNational Reference Center for Respiratory Viruses, Institut Pasteur, Paris, France.
Stefan KrögerDepartment of Infectious Disease Epidemiology, Robert Koch Institute, 13353, Berlin, Germany.ORCID http://orcid.org/0000-0002-9457-4798
Sébastien Calvignac-SpencerEpidemiology of Highly Pathogenic Microorganisms, Robert Koch Institute, 13353, Berlin, Germany.ORCID http://orcid.org/0000-0003-4834-0509
Guy BaeleDepartment of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Herestraat 49, 3000, Leuven, Belgium.ORCID http://orcid.org/0000-0002-1915-7732
Marcus PanningInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. marcus.panning@uniklinik-freiburg.de.ORCID http://orcid.org/0000-0003-3596-5964
Jonas FuchsInstitute of Virology, Freiburg University Medical Center, Faculty of Medicine, University of Freiburg, Freiburg, Germany. jonas.fuchs@uniklinik-freiburg.de.ORCID http://orcid.org/0000-0003-1974-212X

Funding

Bundesministerium für Bildung und Forschung (Federal Ministry of Education and Research) 01KI2077Deutsche Forschungsgemeinschaft (German Research Foundation) PA 2274/4-1Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) C14/18/094Fonds Wetenschappelijk Onderzoek (Research Foundation Flanders) G098321NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) G0D5117NFonds Wetenschappelijk Onderzoek (Research Foundation Flanders) G0E1420N
6 · The paper itself

Abstract

In spring 2021, an increasing number of infections was observed caused by the hitherto rarely described SARS-CoV-2 variant A.27 in south-west Germany. From December 2020 to June 2021 this lineage has been detected in 31 countries. Phylogeographic analyses of A.27 sequences obtained from national and international databases reveal a global spread of this lineage through multiple introductions from its inferred origin in Western Africa. Variant A.27 is characterized by a mutational pattern in the spike gene that includes the L18F, L452R and N501Y spike amino acid substitutions found in various variants of concern but lacks the globally dominant D614G. Neutralization assays demonstrate an escape of A.27 from convalescent and vaccine-elicited antibody-mediated immunity. Moreover, the therapeutic monoclonal antibody Bamlanivimab and partially the REGN-COV2 cocktail fail to block infection by A.27. Our data emphasize the need for continued global monitoring of novel lineages because of the independent evolution of new escape mutations.

Indexed as

PandemicsAfrica, WesternAmino Acid SubstitutionAntibodies, Monoclonal, HumanizedAntibodies, NeutralizingAntibodies, ViralAntiviral AgentsCOVID-19Drug CombinationsGermanyGlobal HealthHumansImmune EvasionMutationPhylogeographySARS-CoV-2Antibodies, Monoclonal, HumanizedAntibodies, NeutralizingAntibodies, ViralAntiviral Agentsbamlanivimabcasirivimab and imdevimab drug combinationDrug CombinationsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID35241661
PMCPMC8894356

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.