Evidence map›Paper›PMID 35240043›Full record

ArticleCell host & microbe2022

Diverse events have transferred genes for edible seaweed digestion from marine to human gut bacteria.

Nicholas A Pudlo, Gabriel Vasconcelos Pereira, Jaagni Parnami, Melissa Cid, Stephanie Markert, Jeffrey P Tingley, Frank Unfried, Ahmed Ali, Neha J Varghese, Kwi S Kim and 13 more

Open access · greenAbstract read
In one paragraph

Article in Cell host & microbe, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 76 citations in OpenAlex.

  1. Trial
  2. Review
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  4. Article
  5. Article
  6. A system for transferring large genetic loci inApplied and environmental microbiology · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Description ofInternational journal of systematic and evolutionary microbiology · 2026
    Article
  14. Review
  15. Article
  16. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 4 countries.

Nicholas A PudloDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Gabriel Vasconcelos PereiraDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Jaagni ParnamiMax Planck Institute for Marine Biology, Bremen, Germany.
Melissa CidMax Planck Institute for Marine Biology, Bremen, Germany.
Stephanie MarkertPharmaceutical Biotechnology, University of Greifswald, 17487 Greifswald, Germany; Institute of Marine Biotechnology, 17489 Greifswald, Germany.
Jeffrey P TingleyAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, AB, Canada.
Frank UnfriedInstitute of Marine Biotechnology, 17489 Greifswald, Germany.
Ahmed AliDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Neha J VargheseDOE Joint Genome Institute, Berkeley, CA, USA.
Kwi S KimDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Austin CampbellDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Karthik UrsDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Yao XiaoDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Ryan AdamsDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
Duña MartinDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA.
David N BolamInstitute for Cell and Molecular Biosciences, Newcastle University, Newcastle upon Tyne, UK.
Dörte BecherDOE Joint Genome Institute, Berkeley, CA, USA.
Emiley A Eloe-FadroshInstitute of Microbiology, University Greifswald, 17487 Greifswald, Germany.
Thomas M SchmidtDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA; Department of Internal Medicine, University of Michigan, Ann Arbor, MI 48109, USA.
D Wade AbbottAgriculture and Agri-Food Canada, Lethbridge Research and Development Centre, Lethbridge, AB, Canada.
Thomas SchwederPharmaceutical Biotechnology, University of Greifswald, 17487 Greifswald, Germany; Institute of Marine Biotechnology, 17489 Greifswald, Germany.
Jan Hendrik HehemannMax Planck Institute for Marine Biology, Bremen, Germany; University of Bremen, Center for Marine Environmental Sciences (MARUM), 28359 Bremen, Germany. Electronic address: jheheman@mpi-bremen.de.
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, MI 48109, USA. Electronic address: emartens@umich.edu.
University of Michigan–Ann Arbor · USInstitute of Marine Biotechnology · DEJoint Genome Institute · USMax Planck Institute for Marine Microbiology · DEAgriculture and Agri-Food Canada · CALethbridge Research and Development CentreNewcastle University · GBUniversity of Bremen · DE

Funding

Low dietary fiber and gut microbiota-induced mucus layer erosion as IBD triggersR01DK118024 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GRACE Y. CHEN, Eric C Martens · 2018 to 2026
$4.9M
Unraveling the enzymatic pathway of gut bacterial mucus degradation to treat inflammationR01DK125445 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KOROPATKIN, NICOLE M, MARTENS, ERIC C · 2020 to 2023
$2.2M
How glycans shape gut microbiota function and assemblyR01GM099513 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2013 to 2016
$1.2M
The role of polysaccharide surface capsules in Bacteroides glycan degradationR03DK096023 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARTENS, ERIC C · 2012 to 2013
$150k
NIDDK NIH HHS R01 DK118024NIDDK NIH HHS R01 DK125445NIDDK NIH HHS R03 DK096023NIGMS NIH HHS R01 GM099513
6 · The paper itself

Abstract

Humans harbor numerous species of colonic bacteria that digest fiber polysaccharides in commonly consumed terrestrial plants. More recently in history, regional populations have consumed edible macroalgae seaweeds containing unique polysaccharides. It remains unclear how extensively gut bacteria have adapted to digest these nutrients. Here, we show that the ability of gut bacteria to digest seaweed polysaccharides is more pervasive than previously appreciated. Enrichment-cultured Bacteroides harbor previously discovered genes for seaweed degradation, which have mobilized into several members of this genus. Additionally, other examples of marine bacteria-derived genes, and their mobile DNA elements, are involved in gut microbial degradation of seaweed polysaccharides, including genes in gut-resident Firmicutes. Collectively, these results uncover multiple separate events that have mobilized the genes encoding seaweed-degrading-enzymes into gut bacteria. This work further underscores the metabolic plasticity of the human gut microbiome and global exchange of genes in the context of dietary selective pressures.

Indexed as

Gastrointestinal MicrobiomeSeaweedBacteriaBacteroidesDigestionHumansPolysaccharidesPolysaccharidesBacteroideshuman gut microbiomelateral gene transferpolysaccharide metabolism

Identifiers

PMID35240043
PMCPMC9096808
OpenAlexW4214835084

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.