Evidence map›Paper›PMID 35239989›Full record

ArticleMolecular plant pathology2022

Two independent approaches converge to the cloning of a new Leptosphaeria maculans avirulence effector gene, AvrLmS-Lep2.

Ting Xiang Neik, Kaveh Ghanbarnia, Bénédicte Ollivier, Armin Scheben, Anita Severn-Ellis, Nicholas J Larkan, Parham Haddadi, Dilantha W G Fernando, Thierry Rouxel, Jacqueline Batley and 2 more

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Breeding and management of major resistance genes to stem canker/blackleg in Brassica crops.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Review
  4. Article
  5. Review
  6. "Late" effectors fromPlant direct · 2022
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Genome-wide mapping of histone modifications during axenic growth in two species of Leptosphaeria maculans showing contrasting genomic organization.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2021
    Article
  12. Analysis of the Oxidative Burst and Its Relevant Signaling Pathways inInternational journal of molecular sciences · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. Recent Findings Unravel Genes and Genetic Factors UnderlyingInternational journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Ting Xiang NeikSchool of Biological Sciences, University of Western Australia, Perth, Western Australia, Australia.
Kaveh GhanbarniaAgriculture and Agri-Food Canada, Saskatoon Research Center, Saskatoon, Saskatchewan, Canada.
Bénédicte OllivierUniversité Paris-Saclay, INRAE, UR BIOGER, Thiverval-Grignon, France.
Armin SchebenSchool of Biological Sciences, University of Western Australia, Perth, Western Australia, Australia.
Anita Severn-EllisSchool of Biological Sciences, University of Western Australia, Perth, Western Australia, Australia.
Nicholas J LarkanAgriculture and Agri-Food Canada, Saskatoon Research Center, Saskatoon, Saskatchewan, Canada.
Parham HaddadiAgriculture and Agri-Food Canada, Saskatoon Research Center, Saskatoon, Saskatchewan, Canada.
Dilantha W G FernandoDepartment of Plant Sciences, University of Manitoba, Winnipeg, Manitoba, Canada.
Thierry RouxelUniversité Paris-Saclay, INRAE, UR BIOGER, Thiverval-Grignon, France.ORCID 0000-0001-9563-1793
Jacqueline BatleySchool of Biological Sciences, University of Western Australia, Perth, Western Australia, Australia.
Hossein M BorhanAgriculture and Agri-Food Canada, Saskatoon Research Center, Saskatoon, Saskatchewan, Canada.
Marie-Hélène BalesdentUniversité Paris-Saclay, INRAE, UR BIOGER, Thiverval-Grignon, France.ORCID 0000-0001-5523-9180
Agriculture and Agri-Food Canada · CAThe University of Western Australia · AUUniversité Paris-Saclay · FRUniversity of Manitoba · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brassica napus (oilseed rape, canola) seedling resistance to Leptosphaeria maculans, the causal agent of blackleg (stem canker) disease, follows a gene-for-gene relationship. The avirulence genes AvrLmS and AvrLep2 were described to be perceived by the resistance genes RlmS and LepR2, respectively, present in B. napus 'Surpass 400'. Here we report cloning of AvrLmS and AvrLep2 using two independent methods. AvrLmS was cloned using combined in vitro crossing between avirulent and virulent isolates with sequencing of DNA bulks from avirulent or virulent progeny (bulked segregant sequencing). AvrLep2 was cloned using a biparental cross of avirulent and virulent L. maculans isolates and a classical map-based cloning approach. Taking these two approaches independently, we found that AvrLmS and AvrLep2 are the same gene. Complementation of virulent isolates with this gene confirmed its role in inducing resistance on Surpass 400, Topas-LepR2, and an RlmS-line. The gene, renamed AvrLmS-Lep2, encodes a small cysteine-rich protein of unknown function with an N-terminal secretory signal peptide, which is a common feature of the majority of effectors from extracellular fungal plant pathogens. The AvrLmS-Lep2/LepR2 interaction phenotype was found to vary from a typical hypersensitive response through intermediate resistance sometimes towards susceptibility, depending on the inoculation conditions. AvrLmS-Lep2 was nevertheless sufficient to significantly slow the systemic growth of the pathogen and reduce the stem lesion size on plant genotypes with LepR2, indicating the potential efficiency of this resistance to control the disease in the field.

Indexed as

AscomycotaBrassica napusCloning, MolecularLeptosphaeriaPlant DiseasesavirulenceAvrLep2AvrLmSBrassica napuscanolaoilseed raperesistance

Identifiers

PMID35239989
PMCPMC8995059
OpenAlexW4214892122

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.