Evidence map›Paper›PMID 35239951›Full record

ArticleThe journals of gerontology. Series A, Biological sciences and medical sciences2022

Ascertainment of Delirium Status Using Natural Language Processing From Electronic Health Records.

Sunyang Fu, Guilherme S Lopes, Sandeep R Pagali, Bjoerg Thorsteinsdottir, Nathan K LeBrasseur, Andrew Wen, Hongfang Liu, Walter A Rocca, Janet E Olson, Jennifer St Sauver and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The journals of gerontology. Series A, Biological sciences and medical sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 3 pooled it
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 3 syntheses or guidelines pooled it, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Sunyang FuDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0003-1691-5179
Guilherme S LopesDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Sandeep R PagaliDepartment of Medicine, Mayo Clinic, Rochester, Minnesota.
Bjoerg ThorsteinsdottirDepartment of Medicine, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-4397-728X
Nathan K LeBrasseurDepartment of Physical Medicine & Rehabilitation, Mayo Clinic, Rochester, Minnesota.
Andrew WenDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Hongfang LiuDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Walter A RoccaDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.ORCID 0000-0002-1832-7664
Janet E OlsonDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Jennifer St SauverDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Sunghwan SohnDepartment of Health Sciences Research, Mayo Clinic, Rochester, Minnesota.
Mayo Clinic in Florida · USMayo Clinic · USUniversity of Minnesota System · US

Funding

Rochester Epidemiology ProjectR01AG034676 · NIA · MAYO CLINIC ROCHESTER · PI ROCCA, WALTER A, ST SAUVER, JENNIFER LYNN · 2010 to 2019
$9.5M
Early Detection of Mild Cognitive Impairment, Alzheimer’s Disease and Other Dementias using EHRR01AG068007 · NIA · MAYO CLINIC ROCHESTER · PI Yonas E Geda, Sunghwan Sohn · 2020 to 2026
$3.8M
Interdisciplinary Infrastructure for Aging Research: Rochester Epidemiology ProjectR33AG058738 · NIA · MAYO CLINIC ROCHESTER · PI LEBRASSEUR, NATHAN K, OLSON, JANET E · 2020 to 2022
$2.4M
Interdisciplinary Infrastructure for Aging Research: Rochester Epidemiology ProjectR21AG058738 · NIA · MAYO CLINIC ROCHESTER · PI LEBRASSEUR, NATHAN K, OLSON, JANET E · 2018 to 2019
$437k
NIA NIH HHS R01 AG034676NIA NIH HHS R01 AG068007NIA NIH HHS R21 AG058738NIA NIH HHS R21 AG58738NIA NIH HHS R33 AG058738
6 · The paper itself

Abstract

backgroundDelirium is underdiagnosed in clinical practice and is not routinely coded for billing. Manual chart review can be used to identify the occurrence of delirium; however, it is labor-intensive and impractical for large-scale studies. Natural language processing (NLP) has the capability to process raw text in electronic health records (EHRs) and determine the meaning of the information. We developed and validated NLP algorithms to automatically identify the occurrence of delirium from EHRs.

methodsThis study used a randomly selected cohort from the population-based Mayo Clinic Biobank (N = 300, age ≥65). We adopted the standardized evidence-based framework confusion assessment method (CAM) to develop and evaluate NLP algorithms to identify the occurrence of delirium using clinical notes in EHRs. Two NLP algorithms were developed based on CAM criteria: one based on the original CAM (NLP-CAM; delirium vs no delirium) and another based on our modified CAM (NLP-mCAM; definite, possible, and no delirium). The sensitivity, specificity, and accuracy were used for concordance in delirium status between NLP algorithms and manual chart review as the gold standard. The prevalence of delirium cases was examined using International Classification of Diseases, 9th Revision (ICD-9), NLP-CAM, and NLP-mCAM.

resultsNLP-CAM demonstrated a sensitivity, specificity, and accuracy of 0.919, 1.000, and 0.967, respectively. NLP-mCAM demonstrated sensitivity, specificity, and accuracy of 0.827, 0.913, and 0.827, respectively. The prevalence analysis of delirium showed that the NLP-CAM algorithm identified 12 651 (9.4%) delirium patients, the NLP-mCAM algorithm identified 20 611 (15.3%) definite delirium cases, and 10 762 (8.0%) possible cases.

conclusionsNLP algorithms based on the standardized evidence-based CAM framework demonstrated high performance in delineating delirium status in an expeditious and cost-effective manner.

Indexed as

DeliriumNatural Language ProcessingAgedAlgorithmsElectronic Health RecordsHumansInternational Classification of DiseasesConfusion assessment methodDeliriumElectronic health recordsNatural language processing

Identifiers

PMID35239951
PMCPMC8893184
OpenAlexW3095585365

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.