Evidence map›Paper›PMID 35235413›Full record

ArticleJCO precision oncology2022

Same-Cell Co-Occurrence of RAS Hotspot and BRAF V600E Mutations in Treatment-Naive Colorectal Cancer.

Rodrigo Gularte-Mérida, Shaleigh Smith, Anita S Bowman, Arnaud da Cruz Paula, Walid Chatila, Craig M Bielski, Monika Vyas, Laetitia Borsu, Ahmet Zehir, Luciano G Martelotto and 11 more

Open access · greenAbstract read
In one paragraph

Article in JCO precision oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 2 institutions in 1 country.

Rodrigo Gularte-MéridaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-4383-2523
Shaleigh SmithDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Anita S BowmanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-8651-5317
Arnaud da Cruz PaulaDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Walid ChatilaDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-5474-218X
Craig M BielskiDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY.
Monika VyasDepartment of Pathology, Beth Israel Deaconess Medical Center, Boston, MA.ORCID 0000-0002-7020-9948
Laetitia BorsuDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Ahmet ZehirDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-5406-4104
Luciano G MartelottoSingle-cell Core Facility, Harvard Medical Center, Boston, MA.ORCID 0000-0002-9625-1183
Jinru ShiaDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-4351-2511
Rona YaegerDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-7233-5454
Fang FangFlow Cytometry Core Facility, Memorial Sloan Kettering Cancer Center, New York, NY.
Rui GardnerFlow Cytometry Core Facility, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-7270-5136
Ruibang LuoDepartment of Computer Science, John Hopkins University, Baltimore, MD.ORCID 0000-0001-9711-6533
Michael C SchatzDepartment of Computer Science, John Hopkins University, Baltimore, MD.ORCID 0000-0002-4118-4446
Ronglai ShenDepartment of Medicine, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0002-8192-7531
Britta WeigeltDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-9927-1270
Francisco Sánchez-VegaDepartment of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY.
Jorge S Reis-FilhoDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0003-2969-3173
Jaclyn F HechtmanDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.
Memorial Sloan Kettering Cancer Center · USBeth Israel Deaconess Medical Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Targeting Polθ to Overcome PARP Inhibitor Resistance in Homologous Recombination Deficient Breast CancerP50CA247749 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Sarat Chandarlapaty, Simon N. Powell · 2020 to 2026
$16.3M
Exploiting the distinct genomics and signaling of colorectal cancers to effectively target ERKR01CA233736 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI YAEGER, RONA · 2019 to 2024
$2.5M
Integrative genomic and epigenomic analysis of cancer using long read sequencingU01CA253481 · NCI · JOHNS HOPKINS UNIVERSITY · PI SCHATZ, MICHAEL · 2021 to 2023
$1.1M
NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA247749NCI NIH HHS R01 CA233736NCI NIH HHS U01 CA253481
6 · The paper itself

Abstract

purposeMitogen-activated protein kinase pathway-activating mutations occur in the majority of colorectal cancer (CRC) cases and show mutual exclusivity. We identified 47 epidermal growth factor receptor/BRAF inhibitor-naive CRC patients with dual MATERIALS AND

methodsWe developed a single-cell genotyping method with a mutation detection rate of 96.3% and a genotype prediction accuracy of 92.1%. Mutations in the CRC-DD cohort were analyzed for clonality, allelic imbalance, copy number, and overall survival.

resultsApplication of single-cell genotyping to four CRC-DD revealed the co-occurrence of both mutations in the following percentages of cells per case:

conclusionOur findings indicate that dual-driver mutations occur in a rare subset of CRC, often within the same tumor cells and across multiple tumor sites. Their presence and a lower rate of allelic imbalance may be related to dose-dependent signaling within the mitogen-activated protein kinase pathway.

Indexed as

Colorectal NeoplasmsProto-Oncogene Proteins B-rafHumansMicrosatellite InstabilityMitogen-Activated Protein KinasesMutationProto-Oncogene Proteins p21(ras)BRAF protein, humanMitogen-Activated Protein KinasesProto-Oncogene Proteins B-rafProto-Oncogene Proteins p21(ras)

Identifiers

PMID35235413
PMCPMC8906458
OpenAlexW4214807880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.