ArticleVirologica Sinica2022
Metagenomic analysis of viral community in the Yangtze River expands known eukaryotic and prokaryotic virus diversity in freshwater.
Article in Virologica Sinica, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17 citing papers in PubMed, 0 citations in OpenAlex.
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- Variations of the Virome in Raw and Treated Water: A One-Year Follow-Up at Six Different Drinking Water Treatment Plants.Environmental microbiology reports · 2025Article
- Viromic analysis of cerebrospinal fluid (CSF) samples identified an unclassified RNA virus exhibiting an atypical genomic architecture.BMC microbiology · 2025Article
- Deciphering the comprehensive microbiome of glacier-fed Ganges and functional aspects: implications for one health.Microbiology spectrum · 2025Article
- Salinity-driven shifts in estuarine viral community composition and diversity near the Shenzhen coast.Applied and environmental microbiology · 2025Article
- Microbial genomic database of the Yangtze River, the third-longest river on Earth.Scientific data · 2025Article
- CrAssphage distribution analysis in an Amazonian river based on metagenomic sequencing data and georeferencing.Applied and environmental microbiology · 2025Article
- RNA-Sequencing Analysis of the Viral Community in Yellow Catfish (Animals : an open access journal from MDPI · 2024Article
- Identification of a novel adenovirus in liver tissue sample of the Great Himalayan leaf-nosed bat (Hipposideros armiger).Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024Article
- Genomic Analysis and Taxonomic Characterization of Seven Bacteriophage Genomes Metagenomic-Assembled from the Dishui Lake.Viruses · 2023Article
- Metagenomic analysis of herbivorous mammalian viral communities in the Northwest Plateau.BMC genomics · 2023Article
- Significant Differences in Planktonic Virus Communities Between "Cellular Fraction" (0.22 ~ 3.0 µm) and "Viral Fraction" (< 0.22 μm) in the Ocean.Microbial ecology · 2023Article
- Metaviromic analyses of DNA virus community from sediments of the N-Choe stream, North India.Virus research · 2023Article
- Diversity and potential function of pig gut DNA viruses.Heliyon · 2023Article
- Viral Metagenomics Reveals Widely Diverse Viral Community of Freshwater Amazonian Lake.Frontiers in public health · 2022Article
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Authors and funding
9 authors at 4 institutions in 1 country.
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No grant is acknowledged in the PubMed record.
Abstract
Viruses in aquatic ecosystems are characterized by extraordinary abundance and diversity. Thus far, there have been limited studies focused on viral communities in river water systems. Here, we investigated the virome of the Yangtze River Delta using viral metagenomic analysis. The compositions of viral communities from six sampling sites were analyzed and compared. By using library construction and next generation sequencing, contigs and singlet reads similar to viral sequences were classified into 17 viral families, including nine dsDNA viral families, four ssDNA viral families and four RNA viral families. Statistical analysis using Friedman test suggested that there was no significant difference among the six sampling sites (P > 0.05). The viromes in this study were all dominated by the order Caudovirales, and a group of Freshwater phage uvFW species were particularly prevalent among all the samples. The virome from Nanjing presented a unique pattern of viral community composition with a relatively high abundance of family Parvoviridae. Phylogenetic analyses based on virus hallmark genes showed that the Caudovirales order and CRESS-DNA viruses presented high genetic diversity, while viruses in the Microviridae and Parvoviridae families and the Riboviria realm were relatively conservative. Our study provides the first insight into viral community composition in large river ecosystem, revealing the diversity and stability of river water virome, contributing to the proper utilization of freshwater resource.
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