Evidence map›Paper›PMID 35234142›Full record

ArticleActa crystallographica. Section D, Structural biology2022

Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.

Laetitia Collet, Corinne Vander Wauven, Yamina Oudjama, Moreno Galleni, Raphaël Dutoit

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Laetitia ColletLABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.ORCID 0000-0002-6249-6828
Corinne Vander WauvenLABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.ORCID 0000-0002-2943-9311
Yamina OudjamaLABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.
Moreno GalleniCenter for Protein Engineering (CIP), Biological Macromolecules, University of Liège, 13 Allée du 6 Août, 4000 Liège, Belgium.ORCID 0000-0003-0992-0391
Raphaël DutoitLABIRIS, 1 Avenue Emile Gryzon, 1070 Brussels, Belgium.ORCID 0000-0002-7139-8402
University of Liège · BE

Funding

Fonds De La Recherche Scientifique - FNRS IISN 4.4503.11FSOLEIL 20151139SOLEIL 20171555SOLEIL 20191372
6 · The paper itself

Abstract

Transglycosylating glycoside hydrolases (GHs) offer great potential for the enzymatic synthesis of oligosaccharides. Although knowledge is progressing, there is no unique strategy to improve the transglycosylation yield. Obtaining efficient enzymatic tools for glycan synthesis with GHs remains dependent on an improved understanding of the molecular factors governing the balance between hydrolysis and transglycosylation. This enzymatic and structural study of RBcel1, a transglycosylase from the GH5_5 subfamily isolated from an uncultured bacterium, aims to unravel such factors. The size of the acceptor and donor sugars was found to be critical since transglycosylation is efficient with oligosaccharides at least the size of cellotetraose as the donor and cellotriose as the acceptor. The reaction pH is important in driving the balance between hydrolysis and transglycosylation: hydrolysis is favored at pH values below 8, while transglycosylation becomes the major reaction at basic pH. Solving the structures of two RBcel1 variants, RBcel1_E135Q and RBcel1_Y201F, in complex with ligands has brought to light some of the molecular factors behind transglycosylation. The structure of RBcel1_E135Q in complex with cellotriose allowed a +3 subsite to be defined, in accordance with the requirement for cellotriose as a transglycosylation acceptor. The structure of RBcel1_Y201F has been obtained with several transglycosylation intermediates, providing crystallographic evidence of transglycosylation. The catalytic cleft is filled with (i) donors ranging from cellotriose to cellohexaose in the negative subsites and (ii) cellobiose and cellotriose in the positive subsites. Such a structure is particularly relevant since it is the first structure of a GH5 enzyme in complex with transglycosylation products that has been obtained with neither of the catalytic glutamate residues modified.

Indexed as

CellulaseBacteriaBacterial ProteinsCellobioseGlycoside HydrolasesGlycosylationHydrolysisSubstrate SpecificityBacterial ProteinsCellobioseCellulaseGlycoside Hydrolasesendo-1,4-β-glucanasesglycosyl hydrolase family 5RBcel1transglycosylation

Identifiers

PMID35234142
PMCPMC8900817
OpenAlexW4213260384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.