Evidence map›Paper›PMID 35233697›Full record

ArticleAnalytical and bioanalytical chemistry2022

A subcellular cookie cutter for spatial genomics in human tissue.

Alexander G Bury, Angela Pyle, Fabio Marcuccio, Doug M Turnbull, Amy E Vincent, Gavin Hudson, Paolo Actis

Open access · hybridAbstract read
In one paragraph

Article in Analytical and bioanalytical chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
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  8. Recent advances in single-cell subcellular sampling.Chemical communications (Cambridge, England) · 2023
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Alexander G BuryWellcome Centre for Mitochondrial Research, Medical School, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK.
Angela PyleWellcome Centre for Mitochondrial Research, Medical School, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK.
Fabio MarcuccioBragg Centre for Materials Research, University of Leeds, Leeds, LS2 9JT, UK.
Doug M TurnbullWellcome Centre for Mitochondrial Research, Medical School, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK.
Amy E VincentWellcome Centre for Mitochondrial Research, Medical School, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK. amy.vincent@newcastle.ac.uk.
Gavin HudsonWellcome Centre for Mitochondrial Research, Medical School, Newcastle University, Newcastle-upon-Tyne, NE2 4HH, UK. gavin.hudson@newcastle.ac.uk.
Paolo ActisBragg Centre for Materials Research, University of Leeds, Leeds, LS2 9JT, UK. p.actis@leeds.ac.uk.
Newcastle University · GBUniversity of Leeds · GBWellcome Centre for Mitochondrial Research · GB

Funding

H2020 Marie Skłodowska-Curie Actions 812398Medical Research Council OSR/0200/2018/BURYWellcome TrustWellcome Trust 203105Wellcome Trust 215888
6 · The paper itself

Abstract

Intracellular heterogeneity contributes significantly to cellular physiology and, in a number of debilitating diseases, cellular pathophysiology. This is greatly influenced by distinct organelle populations and to understand the aetiology of disease, it is important to have tools able to isolate and differentially analyse organelles from precise location within tissues. Here, we report the development of a subcellular biopsy technology that facilitates the isolation of organelles, such as mitochondria, from human tissue. We compared the subcellular biopsy technology to laser capture microdissection (LCM) that is the state-of-the-art technique for the isolation of cells from their surrounding tissues. We demonstrate an operational limit of  >20 µm for LCM and then, for the first time in human tissue, show that subcellular biopsy can be used to isolate mitochondria beyond this limit.

Indexed as

GenomicsBiopsyHumansLaser Capture MicrodissectionGenomicsIsolationMitochondriaOrganelleSICMSubcellular

Identifiers

PMID35233697
PMCPMC9242960
OpenAlexW4221018577

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.