Evidence map›Paper›PMID 35232963›Full record

ArticleNature communications2022

Robust Mendelian randomization in the presence of residual population stratification, batch effects and horizontal pleiotropy.

Carlos Cinelli, Nathan LaPierre, Brian L Hill, Sriram Sankararaman, Eleazar Eskin

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Carlos CinelliDepartment of Statistics, University of Washington, Seattle, WA, USA. cinelli@uw.edu.
Nathan LaPierreDepartment of Computer Science, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-2394-8868
Brian L HillDepartment of Computer Science, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-6881-5770
Sriram SankararamanDepartment of Computer Science, University of California, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0003-1586-9641
Eleazar EskinDepartment of Computer Science, University of California, Los Angeles, CA, USA.

Funding

Medical Imaging Informatics Training GrantT32EB016640 · NIBIB · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALEX BUI, William Hsu · 2013 to 2026
$2.3M
Statistical Models for Dissecting Human Population Admixture and its Role in Evolution and DiseaseR35GM125055 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SANKARARAMAN, SRIRAM · 2017 to 2021
$1.6M
NIBIB NIH HHS T32 EB016640NIGMS NIH HHS R35 GM125055
6 · The paper itself

Abstract

Mendelian Randomization (MR) studies are threatened by population stratification, batch effects, and horizontal pleiotropy. Although a variety of methods have been proposed to mitigate those problems, residual biases may still remain, leading to highly statistically significant false positives in large databases. Here we describe a suite of sensitivity analysis tools that enables investigators to quantify the robustness of their findings against such validity threats. Specifically, we propose the routine reporting of sensitivity statistics that reveal the minimal strength of violations necessary to explain away the MR results. We further provide intuitive displays of the robustness of the MR estimate to any degree of violation, and formal bounds on the worst-case bias caused by violations multiple times stronger than observed variables. We demonstrate how these tools can aid researchers in distinguishing robust from fragile findings by examining the effect of body mass index on diastolic blood pressure and Townsend deprivation index.

Indexed as

Genetic PleiotropyMendelian Randomization AnalysisBiasBlood PressureBody Mass IndexDisease ProgressionGenome-Wide Association StudyHumans

Identifiers

PMID35232963
PMCPMC8888767

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.