Evidence map›Paper›PMID 35231161›Full record

ArticleMolecular oncology2022

The genomic landscape of metastatic clear cell renal cell carcinoma after systemic therapy.

Johannes C van der Mijn, Kenneth W Eng, Pooja Chandra, Evan Fernandez, Sinan Ramazanoglu, Alexandros Sigaras, Clara Oromendia, Lorraine J Gudas, Scott T Tagawa, David M Nanus and 7 more

Open access · goldAbstract read
In one paragraph

Article in Molecular oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 1 institution in 2 countries.

Johannes C van der MijnDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0001-5051-5860
Kenneth W EngEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Pooja ChandraEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Evan FernandezEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Sinan RamazanogluEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Alexandros SigarasEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-7607-559X
Clara OromendiaDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Lorraine J GudasDepartment of Pharmacology, Weill Cornell Medicine, New York, NY, USA.
Scott T TagawaEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
David M NanusEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Bishoy F FaltasEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Himisha BeltranEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Cora N SternbergEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Olivier ElementoEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Andrea SbonerEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Juan Miguel MosqueraEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Ana M MolinaEnglander Institute for Precision Medicine, Weill Cornell Medicine, New York, NY, USA.
Cornell University · US

Funding

Gene Nutrient Interactions in Kidney FunctionR01DK113088 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI GUDAS, LORRAINE J · 2018 to 2025
$3.7M
NIDDK NIH HHS R01 DK113088
6 · The paper itself

Abstract

Primary clear cell renal cell carcinoma (ccRCC) has been previously characterized, but the genomic landscape of metastatic ccRCC is largely unexplored. Here, we performed whole exome sequencing (WES) in 68 samples from 44 patients with ccRCC, including 52 samples from a metastatic site. SETD2, PBRM1, APC and VHL were the most frequently mutated genes in the metastatic ccRCC cohort. RBM10 and FBXW7 were also among the 10 most frequently mutated genes in metastatic tissues. Recurrent somatic copy number variations (CNV) were observed at the previously identified regions 3p25, 9p21 and 14q25, but also at 6p21 (CDKN1A) and 13q14 (RB1). No statistically significant differences were found between samples from therapy-naïve and pretreated patients. Clonal evolution analyses with multiple samples from 13 patients suggested that early appearance of CNVs at 3p25, 9p21 and 14q25 may be associated with rapid clinical progression. Overall, the genomic landscapes of primary and metastatic ccRCC seem to share frequent CNVs at 3p25, 9p21 and 14q25. Future work will clarify the implication of RBM10 and FBXW7 mutations and 6p21 and 13q14 CNVs in metastatic ccRCC.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsDNA Copy Number VariationsF-Box-WD Repeat-Containing Protein 7GenomicsHumansMutationNuclear ProteinsRNA-Binding ProteinsF-Box-WD Repeat-Containing Protein 7Nuclear ProteinsRBM10 protein, humanRNA-Binding ProteinscancergenomicsimmunotherapykidneymetastasisVEGF

Identifiers

PMID35231161
PMCPMC9208073
OpenAlexW4214733058

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.