Evidence map›Paper›PMID 35226663›Full record

ArticlePLoS genetics2022

Nervous system-wide analysis of Hox regulation of terminal neuronal fate specification in Caenorhabditis elegans.

Chaogu Zheng, Ho Ming Terence Lee, Kenneth Pham

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Almost 40 years of studying homeobox genes in C. elegans.Development (Cambridge, England) · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. A molecular atlas of adultbioRxiv : the preprint server for biology · 2023
    Article
  9. Transcriptome age of individual cell types inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Chaogu ZhengSchool of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0002-5048-4520
Ho Ming Terence LeeSchool of Biological Sciences, The University of Hong Kong, Hong Kong SAR, China.ORCID 0000-0003-3376-371X
Kenneth PhamDepartment of Biological Sciences, Columbia University, New York, New York, United States of America.
University of Hong Kong · HKColumbia University · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

Hox genes encode evolutionarily conserved transcription factors that specify regional identities along the anterior-posterior (A-P) axis. Although some Hox genes are known to regulate the differentiation of certain neurons, to what extent Hox genes are involved in the terminal specification of the entire nervous system is unclear. Here, we systematically mapped the expression of all six Hox genes in C. elegans nervous system and found Hox expression in 97 (32%) of the 302 neurons in adult hermaphrodites. Our results are generally consistent with previous high-throughput expression mapping and single-cell transcriptomic studies. Detailed analysis of the fate markers for these neurons revealed that Hox genes regulate the differentiation of 29 (25%) of the 118 classes of C. elegans neurons. Hox genes not only regulate the specification of terminal neuronal fates through multiple mechanisms but also control subtype diversification along the A-P axis. The widespread involvement of Hox genes in neuronal differentiation indicates their roles in establishing complex nervous systems.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsAnimalsGenes, HomeoboxHomeodomain ProteinsNeuronsCaenorhabditis elegans ProteinsHomeodomain Proteins

Identifiers

PMID35226663
PMCPMC8912897
OpenAlexW4214488807

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.