Evidence map›Paper›PMID 35226219›Full record

ArticleAnnals of surgical oncology2022

Prevalence of Tumor Genomic Alterations in Homologous Recombination Repair Genes Among Taiwanese Breast Cancers.

Chi-Cheng Huang, Yi-Fang Tsai, Chun-Yu Liu, Pei-Ju Lien, Yen-Shu Lin, Ta-Chung Chao, Chin-Jung Feng, Yen-Jen Chen, Jiun-I Lai, Nam Nhut Phan and 3 more

Abstract read
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In one paragraph

Article in Annals of surgical oncology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Therapeutic Role of Synthetic Lethality inJournal of immunotherapy and precision oncology · 2024
    Review
  6. Genomic Alterations of Tumors in HER2-Low Breast Cancers.International journal of molecular sciences · 2024
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Chi-Cheng HuangComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Yi-Fang TsaiComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Chun-Yu LiuComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Pei-Ju LienComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Yen-Shu LinComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Ta-Chung ChaoComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Chin-Jung FengComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Yen-Jen ChenComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Jiun-I LaiComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Nam Nhut PhanBioinformatics Program, Taiwan International Graduate Program, Institute of Information Science, Academia Sinica, Taipei, Taiwan.
Chih-Yi HsuSchool of Medicine, College of Medicine, National Yang-Ming Chiao Tung University, Taipei, Taiwan.
Jen-Hwey ChiuComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan.
Ling-Ming TsengComprehensive Breast Center, Department of Surgery, Taipei Veterans General Hospital, Taipei, Taiwan. Lmtseng87@gmail.com.
Taipei Veterans General Hospital · TWNational Yang Ming Chiao Tung University · TWNational Taiwan University · TW

Funding

YongLin Health Care Foundation QCR18002
6 · The paper itself

Abstract

purposeDeleterious germline BRCA1/2 mutations are among the most highly pathogenic variants in hereditary breast and ovarian cancer syndrome. Recently, genes implicated in homologous recombination repair (HRR) pathways have been investigated extensively. Defective HRR genes may indicate potential clinical benefits from PARP (poly ADP ribose polymerase) inhibitors beyond BRCA1/2 mutations.

methodsWe evaluated the prevalence of BRCA1/2 mutations as well as alterations in HRR genes with targeted sequencing. A total of 648 consecutive breast cancer samples were assayed, and HRR genes were evaluated for prevalence in breast cancer tissues.

resultsAmong 648 breast cancers, there were 17 truncating and 2 missense mutations in BRCA1 and 45 truncating and 1 missense mutation in BRCA2, impacting 3% and 5% of the study population (collectively altered in 6%) with cooccurrence of BRCA1/2 in 7 breast cancers. On the other hand, HRR genes were altered in 122 (19%) breast cancers, while TBB (Talazoparib Beyond BRCA) trial-interrogated genes (excluding BRCA1/2) were mutated in 107 (17%) patients. Beyond BRCA1/2, the most prevalent HRR mutant genes came from ARID1A (7%), PALB2 (7%), and PTEN (6%). Collectively, 164 (25%) of the 648 Taiwanese breast cancer samples harbored at least one mutation among HRR genes.

conclusionsThe prevalence of BRCA1/2 mutations was far below one tenth, while the prevalence of HRR mutations was much higher and approached one-fourth among Taiwanese breast cancers. Further opportunities to take advantage of defective HRR genes for breast cancer treatment should be sought for the realization of precision medicine.

Indexed as

Breast NeoplasmsOvarian NeoplasmsBRCA1 ProteinBRCA2 ProteinFemaleGenes, BRCA2GenomicsGerm-Line MutationHumansPrevalenceRecombinational DNA RepairBRCA1 ProteinBRCA2 Protein

Identifiers

PMID35226219
OpenAlexW4214722423

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.