Evidence map›Paper›PMID 35225598›Full record

ArticleBiochemistry2022

Structure and Carbohydrate Recognition by the Nonmitogenic Lectin Horcolin.

Vaishali Narayanan, Kishore Babu Bobbili, Nukathoti Sivaji, Nisha G Jayaprakash, Kaza Suguna, Avadhesha Surolia, Ashok Sekhar

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Algal Lectin Griffithsin Inhibits Ebola Virus Infection.Molecules (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Vaishali NarayananMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Kishore Babu BobbiliMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Nukathoti SivajiMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Nisha G JayaprakashMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Kaza SugunaMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.
Avadhesha SuroliaMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.ORCID 0000-0002-2466-2514
Ashok SekharMolecular Biophysics Unit, Indian Institute of Science, Bangalore 560 012, India.ORCID 0000-0002-8628-7799
Indian Institute of Science Bangalore · IN

Funding

DBT-Wellcome Trust India Alliance IA/I/18/1/503614Wellcome Trust
6 · The paper itself

Abstract

Lectins are sugar-binding proteins that have shown considerable promise as antiviral agents because of their ability to interact with envelope glycoproteins present on the surface of viruses such as HIV-1. However, their therapeutic potential has been compromised by their mitogenicity that stimulates uncontrolled division of T-lymphocytes. Horcolin, a member of the jacalin family of lectins, tightly binds the HIV-1 envelope glycoprotein gp120 and neutralizes HIV-1 particles but is nonmitogenic. In this report, we combine X-ray crystallography and NMR spectroscopy to obtain atomic-resolution insights into the structure of horcolin and the molecular basis for its carbohydrate recognition. Each protomer of the horcolin dimer adopts a canonical β-prism I fold with three Greek key motifs and carries two carbohydrate-binding sites. The carbohydrate molecule binds in a negatively charged pocket and is stabilized by backbone and side chain hydrogen bonds to conserved residues in the ligand-binding loop. NMR titrations reveal a two-site binding mode and equilibrium dissociation constants for the two binding sites determined from two-dimensional (2D) lineshape modeling are 4-fold different. Single-binding-site variants of horcolin confirm the dichotomy in binding sites and suggest that there is allosteric communication between the two sites. An analysis of the horcolin structure shows a network of hydrogen bonds linking the two carbohydrate-binding sites directly and through a secondary binding site, and this coupling between the two sites is expected to assume importance in the interaction of horcolin with high-mannose glycans found on viral envelope glycoproteins.

Indexed as

HIV-1LectinsBinding SitesCarbohydratesCrystallography, X-RayMannoseCarbohydratesLectinsMannose

Identifiers

PMID35225598
PMCPMC7612733
OpenAlexW4214628695

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.