Evidence map›Paper›PMID 35225309›Full record

ArticleOrganic & biomolecular chemistry2022

Small molecule peptidomimetic trypsin inhibitors: validation of an EKO binding mode, but with a twist.

Rui-Liang Lyu, Shaon Joy, Charles Packianathan, Arthur Laganowsky, Kevin Burgess

Open access · greenAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Rui-Liang LyuDepartment of Chemistry, Texas A & M University, Box 30012, College Station, TX 77842-3012, USA. burgess@tamu.edu.
Shaon JoyDepartment of Chemistry, Texas A & M University, Box 30012, College Station, TX 77842-3012, USA. burgess@tamu.edu.
Charles PackianathanDepartment of Chemistry, Texas A & M University, Box 30012, College Station, TX 77842-3012, USA. burgess@tamu.edu.
Arthur LaganowskyDepartment of Chemistry, Texas A & M University, Box 30012, College Station, TX 77842-3012, USA. burgess@tamu.edu.
Kevin BurgessDepartment of Chemistry, Texas A & M University, Box 30012, College Station, TX 77842-3012, USA. burgess@tamu.edu.ORCID 0000-0001-6597-1842
Texas A&M University · US

Funding

Gene regulation of retinal cell differentiationR01EY022645 · NEI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI WEI LIU · 2013 to 2026
$4.6M
Native ion mobility mass spectrometry studies of potassium inward rectifier channels: insight into gating and lipid bindingDP2GM123486 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI LAGANOWSKY, ARTHUR D · 2016 to 2016
$2.2M
Evaluation Of Trk Probes In Models For Dry Eye DiseaseR01EY029695 · NEI · TEXAS A&M UNIVERSITY · PI BURGESS, KEVIN · 2019 to 2021
$1.7M
NEI NIH HHS R01 EY022645NEI NIH HHS R01 EY029695NIGMS NIH HHS DP2 GM123486
6 · The paper itself

Abstract

Examination of a series of naturally-occurring trypsin inhibitor proteins, led to identification of a set of three residues (which we call the "interface triplet") to be determinant of trypsin binding affinity, hence excellent templates for small molecule mimicry. Consequently, we attempted to use the Exploring Key Orientation (EKO) strategy developed in our lab to evaluate small molecules that mimic the interface triplet regions of natural trypsin inhibitors, and hence potentially might bind and inhibit the catalytic activity of trypsin. A bis-triazole scaffold ("TT-mer") was the most promising of the molecules evaluated

Indexed as

PeptidomimeticsTrypsinTrypsin InhibitorsBinding SitesCrystallography, X-RayModels, MolecularMolecular StructureProtein BindingSmall Molecule LibrariesTriazolesPeptidomimeticsSmall Molecule LibrariesTriazolesTrypsinTrypsin Inhibitors

Identifiers

PMID35225309
PMCPMC10365224
OpenAlexW4200143545

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.