Evidence map›Paper›PMID 35224497›Full record

ArticleRSC medicinal chemistry2022

Insights into the modular design of kinase inhibitors and application to Abl and Axl.

Sameer Phadke, Lluis Lopez-Barcons, Nathalie Vandecan, Zhifen Wu, Taylor K Johnson, Eric J Lachacz, Sofia D Merajver, Matthew B Soellner

Open access · greenAbstract read
In one paragraph

Article in RSC medicinal chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Sameer PhadkeDepartment of Chemistry, University of Michigan 930 N. University Ave. Ann Arbor MI 48109 USA soellner@umich.edu.ORCID https://orcid.org/0000-0002-8493-8973
Lluis Lopez-BarconsDepartment of Internal Medicine, University of Michigan 1500 Medical Center Dr Ann Arbor MI 48109 USA.
Nathalie VandecanDepartment of Chemistry, University of Michigan 930 N. University Ave. Ann Arbor MI 48109 USA soellner@umich.edu.
Zhifen WuDepartment of Internal Medicine, University of Michigan 1500 Medical Center Dr Ann Arbor MI 48109 USA.
Taylor K JohnsonDepartment of Chemistry, University of Michigan 930 N. University Ave. Ann Arbor MI 48109 USA soellner@umich.edu.ORCID https://orcid.org/0000-0001-6373-6232
Eric J LachaczDepartment of Chemistry, University of Michigan 930 N. University Ave. Ann Arbor MI 48109 USA soellner@umich.edu.ORCID https://orcid.org/0000-0003-1081-6962
Sofia D MerajverDepartment of Internal Medicine, University of Michigan 1500 Medical Center Dr Ann Arbor MI 48109 USA.
Matthew B SoellnerDepartment of Chemistry, University of Michigan 930 N. University Ave. Ann Arbor MI 48109 USA soellner@umich.edu.ORCID https://orcid.org/0000-0003-1394-8645
University of Michigan · US

Funding

Cellular Biotechnology Training Program (CBTP)T32GM008353 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHWENDEMAN, ANNA · 1991 to 2021
$9.3M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Conformational Control of Protein KinasesR01GM125881 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MATTHEW B SOELLNER · 2017 to 2026
$2.5M
NIGMS NIH HHS R01 GM125881NIGMS NIH HHS T32 GM008353NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Scaffold hopping is a common strategy for generating kinase inhibitors that bind to the DFG-out inactive conformation. Small structural differences in inhibitor scaffolds can have significant effects on potency and selectivity across the kinome, however, these effects are often not studied in detail. Herein, we outline a design strategy to generate an array of DFG-out conformation inhibitors with three different hinge-binders and two DFG-pocket groups. We studied inhibitor selectivity across a large segment of the kinome and elucidated binding preferences that can be used in scaffold hopping campaigns. Using these analyses, we identified two selective inhibitors that display low nanomolar potency against Axl or wild-type and clinically relevant mutants of Abl.

Identifiers

PMID35224497
PMCPMC8792823
OpenAlexW3212398895

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.