Evidence map›Paper›PMID 35223559›Full record

ArticleFrontiers in cellular and infection microbiology2022

Metagenomic Analysis of

Guanrong Feng, Jinyong Zhang, Ying Zhang, Chenghui Li, Duo Zhang, Yiquan Li, Hongning Zhou, Nan Li, Pengpeng Xiao

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Multiple Novel Mosquito-Borne Zoonotic Viruses Revealed in Pangolin Virome.Frontiers in cellular and infection microbiology · 2022
    Article
  10. Frontiers in cellular and infection microbiology · 2022
    Article
  11. Metavirome Analysis ofFrontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Guanrong FengWenzhou Key Laboratory for Virology and Immunology, Institute of Virology, Wenzhou University, Wenzhou, China.
Jinyong ZhangInstitute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, China.
Ying ZhangCollege of Veterinary Medicine, College of Animal Science, Jilin University, Changchun, China.
Chenghui LiCollege of Agriculture, Yanbian University, Yanji, China.
Duo ZhangWenzhou Key Laboratory for Virology and Immunology, Institute of Virology, Wenzhou University, Wenzhou, China.
Yiquan LiAcademician Workstation of Jilin Province, Changchun University of Chinese Medicine, Changchun, China.
Hongning ZhouYunnan Institute of Parasitic Diseases, Puer, China.
Nan LiWenzhou Key Laboratory for Virology and Immunology, Institute of Virology, Wenzhou University, Wenzhou, China.
Pengpeng XiaoWenzhou Key Laboratory for Virology and Immunology, Institute of Virology, Wenzhou University, Wenzhou, China.
Wenzhou University · CNAcademy of Military Medical Sciences · CNChangchun University of Chinese Medicine · CNJilin University · CNYanbian University · CNYunnan Institute of Parasitic Diseases · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We collected 5,500 mosquitoes belonging to six species in three locations in China. Their viromes were tested using metagenomic sequencing and bioinformatic analysis. The affluent viral sequences that were detected and annotated belong to 22 viral taxonomic families. Then, PCR was performed to confirm the results, followed by phylogenetic analysis. Herein, part of mosquito virome was identified, including chikungunya virus (CHIKV), Getah virus (GETV), and Ross river virus (RRV). After metagenomic analysis, seven CHIKV sequences were verified by PCR amplification, among which CHIKV-China/YN2018-1 had the highest homology with the CHIKV isolated in Senegal, 1983, with a nucleotide (nt) identity of at least 81%, belonging to genotype West Africa viral genes. Five GETV sequences were identified, which had a high homology with the GETV sequences isolated from

Indexed as

Chikungunya FeverCulicidaeVirusesAnimalsChinaHorsesHumansPhylogenyRoss River virusTogaviridaeViromemetagenomic analysismosquitophylogenetic analysisviromevirus detection

Identifiers

PMID35223559
PMCPMC8878809
OpenAlexW4211056746

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.