ArticleFrontiers in plant science2022
Genome-Wide Association Analysis for Salt-Induced Phenotypic and Physiologic Responses in Rice at Seedling and Reproductive Stages.
Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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6 citing papers in PubMed, 12 citations in OpenAlex.
- Genome-Wide Association Study Identifies Candidate Genes for Salt Tolerance in Traditional Rice Landraces.Rice (New York, N.Y.) · 2026Article
- Improving grain yield and salt tolerance by optimizing plant height with beneficial haplotypes in rice (Oryza sativa).Journal of advanced research · 2025Article
- Dissecting the genetic and phenotypic basis of salinity tolerance in mungbean: insights from multi-stage phenotyping, GWAS and genomic prediction.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-wide association mapping for salinity recovery of rice seedlings grown in hydroponic and field conditions.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025Article
- GWAS combined with linkage analysis reveals major QTLs and candidate genes of salt tolerance inFrontiers in plant science · 2024Article
- Progress and prospects in harnessing wild relatives for genetic enhancement of salt tolerance in rice.Frontiers in plant science · 2023Review
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Authors and funding
13 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Salinity is one of the main adverse environmental factors severely inhibiting rice growth and decreasing grain productivity. Developing rice varieties with salt tolerance (ST) is one of the most economical approaches to cope with salinity stress. In this study, the salt tolerance of 220 rice accessions from rice diversity panel l (RDP1), representing five subpopulations, were evaluated based on 16 ST indices at both seedling and reproductive stages under salt stress. An apparent inconsistency was found for ST between the two stages. Through a gene-based/tightly linked genome-wide association study with 201,332 single nucleotide polymorphisms (SNPs) located within genes and their flanking regions were used, a total of 214 SNPs related to 251 genes, significantly associated with 16 ST-related indices, were detected at both stages. Eighty-two SNPs with low frequency favorable (LFF) alleles in the population were proposed to hold high breeding potential in improving rice ST. Fifty-four rice accessions collectively containing all these LFF alleles were identified as donors of these alleles. Through the integration of meta-quantitative trait locus (QTL) for ST and the response patterns of differential expression genes to salt stress, thirty-eight candidate genes were suggested to be involved in the regulation of rice ST. In total, the present study provides valuable information for further characterizing ST-related genes and for breeding ST varieties across whole developmental stages through marker-assisted selection (MAS).
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