Evidence map›Paper›PMID 35218569›Full record

ArticleProteins2022

Searching for a mechanistic description of pairwise epistasis in protein systems.

Jonathan E Barnes, Craig R Miller, Frederick Marty Ytreberg

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. ΦX174 bacteriophage viability predicted by protein biophysical modeling.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jonathan E BarnesDepartment of Physics, University of Idaho, Moscow, Idaho, USA.ORCID 0000-0002-5434-1391
Craig R MillerInstitute for Modeling Collaboration and Innovation, University of Idaho, Moscow, Idaho, USA.
Frederick Marty YtrebergDepartment of Physics, University of Idaho, Moscow, Idaho, USA.
University of Idaho · US

Funding

Sequence-structure-function relationships in human visual photopigmentsP20GM104420 · NIGMS · UNIVERSITY OF IDAHO · PI WICHMAN, HOLLY A · 2015 to 2024
$22.9M
Genomics Resources Core (GRC)P30GM103324 · NIGMS · UNIVERSITY OF IDAHO · PI SETTLES, MATTHEW · 2013 to 2017
$5.0M
Center for Research on Processes in EvolutionP20GM103397 · NIGMS · UNIVERSITY OF IDAHO · PI FORNEY, LARRY J · 2012 to 2012
$1.9M
NIGMS NIH HHS P20 GM103397NIGMS NIH HHS P20 GM104420NIGMS NIH HHS P30 GM103324NIH HHS P30 GM103324
6 · The paper itself

Abstract

When two or more amino acid mutations occur in protein systems, they can interact in a nonadditive fashion termed epistasis. One way to quantify epistasis between mutation pairs in protein systems is by using free energy differences: ϵ = ΔΔG

Indexed as

Epistasis, GeneticEvolution, MolecularMutationProtein FoldingProteinsProtein StabilityProteinsbinding affinityepistasisfolding stabilitynon-additivitystatistical modeling

Identifiers

PMID35218569
PMCPMC9177791
OpenAlexW4220754251

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.