Evidence map›Paper›PMID 35218538›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2022

Quantitative Immunofluorescent Imaging of Immune Cells in Mucosal Tissues.

Lane B Buchanan, Zhongtian Shao, Yuan Chung Jiang, Abbie Lai, Thomas J Hope, Ann M Carias, Jessica L Prodger

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 4 citations in OpenAlex.

  1. Trial
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lane B Buchanan *Department of Microbiology and Immunology, Western University, London, ON, Canada.
Zhongtian Shao *Department of Microbiology and Immunology, Western University, London, ON, Canada.
Yuan Chung JiangDepartment of Microbiology and Immunology, Western University, London, ON, Canada.
Abbie LaiDepartment of Microbiology and Immunology, Western University, London, ON, Canada.
Thomas J HopeDepartment of Cellular and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Ann M CariasDepartment of Cellular and Developmental Biology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Jessica L ProdgerDepartment of Microbiology and Immunology, Western University, London, ON, Canada. jprodge@uwo.ca.
Western University · CANorthwestern University · US

Funding

Identification of the Initial Targets of Transmission R37AI094595 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Thomas Hope · 2017 to 2026
$10.0M
NIAID NIH HHS R37 AI094595
6 · The paper itself

Abstract

Understanding the interplay between commensals, pathogens, and immune cells in the skin and mucosal tissues is critical to improve prevention and treatment of a myriad of diseases. While high-parameter flow cytometry is the current gold standard for immune cell characterization in blood, it is less suitable for mucosal tissues, where structural and spatial information is lost during tissue disaggregation. Immunofluorescence overcomes this limitation, serving as an excellent alternative for studying immune cells in mucosal tissues. However, the use of immunofluorescent microscopy for analyzing clinical samples is hampered by a lack of high-throughput quantitative analysis techniques. In this chapter, we describe methods for sectioning, staining, and imaging whole sections of human foreskin tissue. We also describe methods to automate immune cell quantification from immunofluorescent images, including image preprocessing and methods to quantify both circular and irregularly shaped immune cells using open-source software.

Indexed as

Mucous MembraneSoftwareFluorescent Antibody TechniqueHumansImage Processing, Computer-AssistedMicroscopy, FluorescenceStaining and LabelingAutomated cell countingEpitheliumImmunologyMucosaQuantitative immunofluorescent microscopySkin

Identifiers

PMID35218538
PMCPMC12269647
OpenAlexW4214764511

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.