Evidence map›Paper›PMID 35218390›Full record

ArticleApplied microbiology and biotechnology2022

Crossregulation of rapamycin and elaiophylin biosynthesis by RapH in Streptomyces rapamycinicus.

Wenyan He, Wenfang Wang, Jiaxiang Ma, Guosong Zheng, Andrei A Zimin, Weihong Jiang, Jinzhong Tian, Yinhua Lu

Abstract read
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In one paragraph

Article in Applied microbiology and biotechnology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Wenyan He *College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China.
Wenfang Wang *College of Life Sciences, Shanghai Normal University, Shanghai, 200234, China.
Jiaxiang MaCollege of Life Sciences, Shanghai Normal University, Shanghai, 200234, China.
Guosong ZhengCollege of Life Sciences, Shanghai Normal University, Shanghai, 200234, China.
Andrei A ZiminG.K. Scriabin Institute of Biochemistry and Physiology of Microorganisms RAS, Pushchino, 142290, Russia.
Weihong JiangKey Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China.
Jinzhong TianKey Laboratory of Synthetic Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai, 200032, China. tianjinzhong@cemps.ac.cn.
Yinhua LuCollege of Life Sciences, Shanghai Normal University, Shanghai, 200234, China. yhlu@shnu.edu.cn.ORCID http://orcid.org/0000-0001-5696-4018
Shanghai Normal University · CNChinese Academy of Sciences · CNG. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms · RU

Funding

National Natural Science Foundation of China 31770088National Natural Science Foundation of China 31970083the National Key Research and Development Program 2018YFA0903700the National Key Research and Development Program 2019YFA0905400the National Key Research and Development Program 2021YFC2100600
6 · The paper itself

Abstract

Rapamycin is an important macrocyclic antibiotic produced by Streptomyces rapamycinicus. In the rapamycin biosynthetic gene cluster (BGC), there are up to five regulatory genes, which have been shown to play important roles in the regulation of rapamycin biosynthesis. Here, we demonstrated that the rapamycin BGC-situated LAL family regulator RapH co-ordinately regulated the biosynthesis of both rapamycin and elaiophylin. We showed that rapH overexpression not only resulted in enhanced rapamycin production but also led to increased synthesis of another type I polyketide antibiotic, elaiophylin. Consistent with this, rapH deletion resulted in decreased production of both antibiotics. Through real-time RT-PCR combined with β-glucuronidase reporter assays, four target genes controlled by RapH, including rapL (encoding a lysine cyclodeaminase)/rapH in the rapamycin BGC and ela3 (encoding a LuxR family regulator)/ela9 (encoding a hypothetical protein) in the elaiophylin BGC, were identified. A relatively conserved signature sequence recognized by RapH, which comprises two 4-nt inverted repeats separated by 8-nt, 5'-GTT/AC-N

Indexed as

SirolimusStreptomycesBacterial ProteinsGene Expression Regulation, BacterialMacrolidesMultigene FamilyBacterial ProteinselaiophylinMacrolidesSirolimusCluster-situated regulatorElaiophylinRapamycinStreptomyces rapamycinicus

Identifiers

PMID35218390
OpenAlexW4214482714

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.