Evidence map›Paper›PMID 35217614›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Evolutionarily conserved inhibitory uORFs sensitize

Ivaylo P Ivanov, James A Saba, Chen-Ming Fan, Ji Wang, Andrew E Firth, Chune Cao, Rachel Green, Thomas E Dever

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 40 citations in OpenAlex.

  1. Evaluating the reliability of tools for mRNA annotation and IRES studies.bioRxiv : the preprint server for biology · 2026
    Article
  2. Review
  3. Structural basis for non-AUG translation regulation by 5MPs.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. eIF1 and eIF5 dynamically control translation start site fidelity.Nature structural & molecular biology · 2025
    Article
  6. Ins and outs of IRES elements: function and significance.Biochemical Society transactions · 2025
    Review
  7. Article
  8. Built differently or defective: can RNA exosomopathies cause ribosome heterogeneity?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  9. Evaluation of Eukaryotic mRNA Coding Potential.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  10. Article
  11. Ribosome Assembly and Repair.Annual review of cell and developmental biology · 2024
    Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. bioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Ivaylo P IvanovEunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892.ORCID 0000-0002-6008-3261
James A SabaHHMI, Johns Hopkins University School of Medicine, Baltimore, MD 21205.ORCID 0000-0003-3453-8151
Chen-Ming FanDepartment of Embryology, Carnegie Institution for Science, Baltimore, MD 21218.ORCID 0000-0003-3211-6617
Ji WangDivision of Virology, Department of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom.
Andrew E FirthDivision of Virology, Department of Pathology, University of Cambridge, Cambridge CB2 1QP, United Kingdom.
Chune CaoEunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892.
Rachel GreenHHMI, Johns Hopkins University School of Medicine, Baltimore, MD 21205; ragreen@jhmi.edu thomas.dever@nih.gov.ORCID 0000-0001-9337-2003
Thomas E DeverEunice Kennedy Shriver National Institute of Child Health and Human Development, NIH, Bethesda, MD 20892; ragreen@jhmi.edu thomas.dever@nih.gov.
Eunice Kennedy Shriver National Institute of Child Health and Human Development · USJohns Hopkins University · USUniversity of Cambridge · GBCarnegie Institution for Science · US

Funding

Mechanism and Regulation of Eukaryotic Protein SynthesisZIAHD001010 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI DEVER, THOMAS E · 2009 to 2025
$29.4M
Medical Scientist Training ProgramT32GM136577 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI ANDREA L COX · 2020 to 2026
$13.4M
Muscle Stem Cell LineageR01AR060042 · NIAMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI FAN, CHEN-MING · 2010 to 2019
$3.5M
Integrin signaling in skeletal muscle regenerationR01AR071976 · NIAMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI FAN, CHEN-MING · 2017 to 2021
$1.8M
Proliferation competence of skeletal muscle stem cellsR01AR072644 · NIAMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI FAN, CHEN-MING · 2018 to 2022
$1.8M
Defining protein synthesis demands and specificities in multiple myelomaF30CA260910 · NCI · JOHNS HOPKINS UNIVERSITY · PI SABA, JAMES ANDREW · 2021 to 2023
$155k
Intramural NIH HHS ZIA HD001010NCI NIH HHS F30 CA260910NIAMS NIH HHS R01 AR060042NIAMS NIH HHS R01 AR071976NIAMS NIH HHS R01 AR072644NIGMS NIH HHS T32 GM136577Wellcome Trust
6 · The paper itself

Abstract

Translation start site selection in eukaryotes is influenced by context nucleotides flanking the AUG codon and by levels of the eukaryotic translation initiation factors eIF1 and eIF5. In a search of mammalian genes, we identified five homeobox (

Indexed as

Codon, InitiatorEvolution, MolecularGenes, HomeoboxProtein BiosynthesisAnimalsMiceOpen Reading FramesRNA, MessengerCodon, InitiatorRNA, MessengereIF1eIF5Hox genesstart codon selection stringencyuORF

Identifiers

PMID35217614
PMCPMC8892498
OpenAlexW4214664908

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.