Evidence map›Paper›PMID 35216671›Full record

ArticleCell stem cell2022

8C-like cells capture the human zygotic genome activation program in vitro.

Jasmin Taubenschmid-Stowers, Maria Rostovskaya, Fátima Santos, Sebastian Ljung, Ricard Argelaguet, Felix Krueger, Jennifer Nichols, Wolf Reik

Open access · bronzeAbstract read
In one paragraph

Article in Cell stem cell, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
12.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 149 citations in OpenAlex.

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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jasmin Taubenschmid-StowersEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK. Electronic address: jasmin.stowers@babraham.ac.uk.
Maria RostovskayaEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK.
Fátima SantosEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK; Centre for Trophoblast Research, University of Cambridge, Cambridge CB2 3EG, UK.
Sebastian LjungEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK.
Ricard ArgelaguetEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK.
Felix KruegerEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK.
Jennifer NicholsCentre for Trophoblast Research, University of Cambridge, Cambridge CB2 3EG, UK; Wellcome-MRC Cambridge Stem Cell Institute, University of Cambridge, Cambridge CB2 0AW, UK; Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge CB2 3EL, UK.
Wolf ReikEpigenetics Programme, Babraham Institute, Cambridge CB22 3AT, UK; Centre for Trophoblast Research, University of Cambridge, Cambridge CB2 3EG, UK; Wellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, UK. Electronic address: wolf.reik@babraham.ac.uk.
Babraham Institute · GBWellcome/MRC Cambridge Stem Cell Institute · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/E/B/000C0422Biotechnology and Biological Sciences Research Council BB/T007044/1Medical Research Council MR/P010423/1Medical Research Council MR/V02969X/1Wellcome TrustWellcome Trust 210754/Z/18/ZWellcome Trust 220379/Z/20/Z
6 · The paper itself

Abstract

The activation of the embryonic genome marks the first major wave of transcription in the developing organism. Zygotic genome activation (ZGA) in mouse 2-cell embryos and 8-cell embryos in humans is crucial for development. Here, we report the discovery of human 8-cell-like cells (8CLCs) among naive embryonic stem cells, which transcriptionally resemble the 8-cell human embryo. They express ZGA markers, including ZSCAN4 and LEUTX, and transposable elements, such as HERVL and MLT2A1. 8CLCs show reduced SOX2 levels and can be identified using TPRX1 and H3.Y marker proteins in vitro. Overexpression of the transcription factor DUX4 and spliceosome inhibition increase human ZGA-like transcription. Excitingly, the 8CLC markers TPRX1 and H3.Y are also expressed in ZGA-stage 8-cell human embryos and may thus be relevant in vivo. 8CLCs provide a unique opportunity to characterize human ZGA-like transcription and might provide critical insights into early events in embryogenesis in humans.

Indexed as

Gene Expression Regulation, DevelopmentalZygoteAnimalsEmbryonic DevelopmentGenome, HumanHumansMiceTranscription FactorsTranscription Factors8CLCshuman pre-implantation developmentin vitro model systemnaive pluripotent stem cellszygotic genome activation

Identifiers

PMID35216671
PMCPMC8901440
OpenAlexW4214640971

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.