Evidence map›Paper›PMID 35215866›Full record

ArticleViruses2022

High Level of Pre-Treatment HIV-1 Drug Resistance and Its Association with HLA Class I-Mediated Restriction in the Pumwani Sex Worker Cohort.

Rachel Willim, Elnaz Shadabi, Raghavan Sampathkumar, Lin Li, Robert Balshaw, Joshua Kimani, Francis A Plummer, Ma Luo, Binhua Liang

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. BeyondFrontiers in genetics · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Rachel WillimMax Rady College of Medicine, University of Manitoba, Winnipeg, MB R3E 3P5, Canada.
Elnaz ShadabiCenter for Biosecurity, Public Health Agency of Canada, Ottawa, ON K1A 0K9, Canada.
Raghavan SampathkumarAdvanced Technology Platform Centre, Regional Centre for Biotechnology, Faridabad 121001, India.
Lin LiNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3L5, Canada.
Robert BalshawData Sciences Platform, George & Fay Yee Centre for Healthcare Innovation, University of Manitoba, Winnipeg, MB R3E 0T6, Canada.
Joshua KimaniDepartment of Medical Microbiology and Infectious Diseases, Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB R3E 0J9, Canada.
Francis A PlummerDepartment of Medical Microbiology and Infectious Diseases, Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB R3E 0J9, Canada.
Ma LuoNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3L5, Canada.
Binhua LiangNational Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, MB R3E 3L5, Canada.
Public Health Agency of Canada · CAUniversity of Manitoba · CAGeorge & Fay Yee Centre for Healthcare Innovation · CAKenya AIDS Vaccine Initiative · KERegional Centre for Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundWe analyzed the prevalence of pre-antiretroviral therapy (ART) drug resistance mutations (DRMs) in a Kenyan population. We also examined whether host HLA class I genes influence the development of pre-ART DRMs.

methodsThe HIV-1 proviral DNAs were amplified from blood samples of 266 ART-naïve women from the Pumwani Sex Worker cohort of Nairobi, Kenya using a nested PCR method. The amplified HIV genomes were sequenced using next-generation sequencing technology. The prevalence of pre-ART DRMs was investigated. Correlation studies were performed between HLA class I alleles and HIV-1 DRMs.

resultsNinety-eight percent of participants had at least one DRM, while 38% had at least one WHO surveillance DRM. M184I was the most prevalent clinically important variant, seen in 37% of participants. The DRMs conferring resistance to one or more integrase strand transfer inhibitors were also found in up to 10% of participants. Eighteen potentially relevant (

conclusionsHigh levels of HIV drug resistance were found in all classes of antiretroviral drugs included in the current first-line ART regimens in Africa. The development of DRMs may be influenced by host HLA class I-restricted immunity.

Indexed as

Genes, MHC Class ISex WorkersAdolescentAdultAllelesAnti-HIV AgentsCohort StudiesDrug Resistance, ViralFemaleHIV-1HIV InfectionsHumansKenyaMutationYoung AdultAnti-HIV Agentsantiretroviral therapydrug-resistant mutationhuman immunodeficiency virushuman leukocyte antigennext-generation sequencing technology

Identifiers

PMID35215866
PMCPMC8879707
OpenAlexW4210254172

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.