Evidence map›Paper›PMID 35215818›Full record

ArticleViruses2022

Structural Assembly of Qβ Virion and Its Diverse Forms of Virus-like Particles.

Jeng-Yih Chang, Karl V Gorzelnik, Jirapat Thongchol, Junjie Zhang

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  4. Article
  5. Chemical reviews · 2026
    Review
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  7. Suppressing Transfer of Antibiotic Resistance by a Small RNA Virus.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Pleomorphism in Wild-Type and Engineered PP7 Virus-Like Particles.Small (Weinheim an der Bergstrasse, Germany) · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jeng-Yih ChangCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Karl V GorzelnikCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0003-0056-4327
Jirapat ThongcholCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.
Junjie ZhangCenter for Phage Technology, Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA.ORCID 0000-0002-7912-0819
Texas A&M University · US

Funding

Vulnerabilities in Mycobacterial Cell-Wall BiogenesisP01AI095208 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SACCHETTINI, JAMES C · 2012 to 2022
$19.8M
CryoEM Data Collection Facility Consortium at NCMIU24GM116787 · NIGMS · STANFORD UNIVERSITY · PI BULLITT, ESTHER, CHIU, WAH · 2016 to 2020
$3.1M
RNA penetrations into bacteria.R01GM141659 · NIGMS · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, JUNJIE · 2022 to 2025
$2.3M
Reducing Virulence Through the Suppression of Retractile PiliR21AI156846 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ZENG, LANYING, ZHANG, JUNJIE · 2021 to 2022
$395k
Characterize essential regions in C. difficile toxin B for its neutralizationR21AI137696 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ZHANG, JUNJIE · 2018 to 2019
$390k
NIAID NIH HHS P01 AI095208NIAID NIH HHS R21 AI137696NIAID NIH HHS R21 AI156846NIGMS NIH HHS R01 GM141659
6 · The paper itself

Abstract

The coat proteins (CPs) of single-stranded RNA bacteriophages (ssRNA phages) directly assemble around the genomic RNA (gRNA) to form a near-icosahedral capsid with a single maturation protein (Mat) that binds the gRNA and interacts with the retractile pilus during infection of the host. Understanding the assembly of ssRNA phages is essential for their use in biotechnology, such as RNA protection and delivery. Here, we present the complete gRNA model of the ssRNA phage Qβ, revealing that the 3' untranslated region binds to the Mat and the 4127 nucleotides fold domain-by-domain, and is connected through long-range RNA-RNA interactions, such as kissing loops. Thirty-three operator-like RNA stem-loops are located and primarily interact with the asymmetric A/B CP-dimers, suggesting a pathway for the assembly of the virions. Additionally, we have discovered various forms of the virus-like particles (VLPs), including the canonical

Indexed as

Virus AssemblyBacteriophagesCapsidCapsid ProteinsCryoelectron MicroscopyModels, MolecularRNA, ViralVirionCapsid ProteinsRNA, Viralgenomic RNAsingle-particlessRNA virusvirus assembly

Identifiers

PMID35215818
PMCPMC8880383
OpenAlexW4210782569

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.