Evidence map›Paper›PMID 35213211›Full record

ArticleScience immunology2022

Single-cell eQTL analysis of activated T cell subsets reveals activation and cell type-dependent effects of disease-risk variants.

Benjamin J Schmiedel, Cristian Gonzalez-Colin, Vicente Fajardo, Job Rocha, Ariel Madrigal, Ciro Ramírez-Suástegui, Sourya Bhattacharyya, Hayley Simon, Jason A Greenbaum, Bjoern Peters and 4 more

Open access · greenAbstract read
In one paragraph

Article in Science immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 94 citations in OpenAlex.

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  18. Multi-omics Data Integration.Advances in experimental medicine and biology · 2026
    Review
  19. Multimodal analysis definesbioRxiv : the preprint server for biology · 2025
    Article
  20. bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 1 institution in 3 countries.

Benjamin J SchmiedelLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-9103-9378
Cristian Gonzalez-ColinLa Jolla Institute for Immunology, La Jolla, CA, USA.
Vicente FajardoLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-1578-7438
Job RochaLa Jolla Institute for Immunology, La Jolla, CA, USA.
Ariel MadrigalLa Jolla Institute for Immunology, La Jolla, CA, USA.
Ciro Ramírez-SuásteguiLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0001-8126-710X
Sourya BhattacharyyaLa Jolla Institute for Immunology, La Jolla, CA, USA.
Hayley SimonLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-7857-3795
Jason A GreenbaumLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-1381-0390
Bjoern PetersLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-8457-6693
Grégory SeumoisLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-8164-6852
Ferhat AyLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-0708-6914
Vivek ChandraLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0002-4047-015X
Pandurangan VijayanandLa Jolla Institute for Immunology, La Jolla, CA, USA.ORCID 0000-0001-7067-9723
La Jolla Institute for Immunology · US

Funding

Research Resources: Epigenomic and Transcriptomic Profiles of Human Immune CellsR24AI108564 · NIAID · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI MITCHELL KRONENBERG, Bjoern Peters · 2014 to 2026
$12.1M
Studying the function of human genetic variation in the light of 3D genome organizationR35GM128938 · NIGMS · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI Ferhat Ay · 2018 to 2026
$4.6M
NovaSeq5000 High Throughput SequencerS10OD025052 · OD · LA JOLLA INSTITUTE FOR IMMUNOLOGY · PI SEUMOIS, GREGORY · 2018 to 2018
$832k
NIAID NIH HHS R24 AI108564NIGMS NIH HHS R35 GM128938NIH HHS S10 OD025052
6 · The paper itself

Abstract

The impact of genetic variants on cells challenged in biologically relevant contexts has not been fully explored. Here, we activated CD4

Indexed as

Quantitative Trait LociSingle-Cell AnalysisAdolescentAdultCD4-Positive T-LymphocytesFemaleHumansMaleMiddle AgedPolymorphism, GeneticT-Lymphocyte SubsetsYoung Adult

Identifiers

PMID35213211
PMCPMC9035271
OpenAlexW4214763387

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.