Evidence map›Paper›PMID 35212872›Full record

ArticleExperimental & applied acarology2022

An evaluation of errors in the mitochondrial COI sequences of Hydrachnidia (Acari, Parasitengona) in public databases.

María L Peláez, José L Horreo, Ricardo García-Jiménez, Antonio G Valdecasas

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In one paragraph

Article in Experimental & applied acarology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

María L PeláezMuseo Nacional de Ciencias Naturales, C/José Gutiérrez Abascal, 2, 28006, Madrid, Spain. maaller@yahoo.es.
José L HorreoUMIB Research Unit of Biodiversity (UO, CSIC, PA), Oviedo University - Campus Mieres, C/Gonzalo Gutiérrez Quirós s/n, 33600, Mieres, Spain.
Ricardo García-JiménezMuseo Nacional de Ciencias Naturales, C/José Gutiérrez Abascal, 2, 28006, Madrid, Spain.
Antonio G ValdecasasMuseo Nacional de Ciencias Naturales, C/José Gutiérrez Abascal, 2, 28006, Madrid, Spain.

Funding

Gobierno del Principado de Asturias SV-16-UMB-1
6 · The paper itself

Abstract

Public molecular databases are fundamental tools for modern taxonomic studies whose usefulness rely on the soundness of the data within them. Here, we study potential errors that can arise along the data pipeline from sampling, specimen identification and molecular processing (digestion, amplification and sequencing) to the submission of sequences to these databases by using the DNA sequences of Hydrachnidia (Acari, Parasitengona) as a case study. Our results indicate that molecular information is available for only about 3% of the Hydrachnidia species known to date; yet, within this small percentage, errors are present in almost 5% of the species analyzed (0.5% of the sequences and almost 11% of the genera). This study underscores the scarcity of genetic data available for Hydrachnidia, but also that the proportion of errors in DNA sequences is relatively small. Even so, it highlights the danger associated with using DNA sequences from public databases, particularly for species identification, and reinforces the need for greater quality control measures and/or protocols to avoid an intensification of errors in the (post) genomics era. Finally, our study emphasizes that potential errors may also reveal cryptic diversity within a species.

Indexed as

MitesAnimalsDNA Barcoding, TaxonomicPhylogenyBOLDCryptic diversityGenBankPhylogenySpecies identificationWater mites

Identifiers

PMID35212872
PMCPMC11602793

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.