Evidence map›Paper›PMID 35211992›Full record

ArticleJournal of medical virology2022

Comparison of performance between three SARS-CoV-2 molecular assays (Aptima™, Laboratory Developed Test-Fusion, and R-GENE®) with special attention to turnaround time, a key point in laboratory management.

Caroline Lefeuvre, Adeline Pivert, Emilie Przyrowski, Elise Bouthry, Estelle Darviot, Rafaël Mahieu, Françoise Lunel-Fabiani, Alexandra Ducancelle, Hélène Le Guillou-Guillemette

Abstract read
In one paragraph

Article in Journal of medical virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Caroline LefeuvreVirology Department, Angers University Hospital, Angers, France.ORCID 0000-0003-4934-5926
Adeline PivertVirology Department, Angers University Hospital, Angers, France.
Emilie PrzyrowskiVirology Department, Angers University Hospital, Angers, France.
Elise BouthryVirology Department, Angers University Hospital, Angers, France.
Estelle DarviotPaediatric Department, Angers University Hospital, Angers, France.
Rafaël MahieuDepartment of Infectious Diseases, Angers University Hospital, Angers, France.
Françoise Lunel-FabianiVirology Department, Angers University Hospital, Angers, France.
Alexandra DucancelleVirology Department, Angers University Hospital, Angers, France.
Hélène Le Guillou-GuillemetteVirology Department, Angers University Hospital, Angers, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The emergence of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) highlights the importance of rapid diagnostic testing to identify individuals with SARS-CoV-2 infections and to limit the spread of the virus. Many molecular assays have become commercially available to cope with this surging demand for timely diagnosis of COVID-19 cases, but identifying individuals requires accurate diagnostic tools. We compared the performance of three molecular SARS-CoV-2 assays: Aptima™ SARS-CoV-2 assay running on the Panther system (Hologic), an in-house assay (Laboratory Developed Test, LDT) running on the Fusion module of the Panther Fusion system (LDT-Fusion; Hologic), and the R-GENE® SARS-CoV-2 assay (bioMérieux). In addition, we also evaluated the turnaround time. This parameter is crucial to managing the SARS-CoV-2 diagnosis and represents a key point in the quality management at the laboratory. Aptima™ and LDT-Fusion assays exhibited an excellent positive percent agreement (PPA) (100.0%), while the R-GENE® assay showed a slightly decreased PPA (98.2%). The Hologic assays have a higher throughput with less hands-on time than the R-GENE® assays (24-25 vs. 71 min). Both Hologic assays are used on a fully automated random-access testing system with on-demand testing capabilities that avoid run series, unlike the R-GENE® assay. Automated random-access testing systems should be preferred during periods of high SARS-CoV-2 prevalence.

Indexed as

COVID-19SARS-CoV-2COVID-19 TestingHumansSensitivity and Specificityperformance evaluationrespiratory tract samplesreverse transcriptase-polymerase chain reactionSARS-CoV-2transcription-mediated amplification assayturnaround time

Identifiers

PMID35211992
PMCPMC9088664

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.