Evidence map›Paper›PMID 35211661›Full record

ArticleComputational toxicology (Amsterdam, Netherlands)2022

Probabilistic modelling of developmental neurotoxicity based on a simplified adverse outcome pathway network.

Nicoleta Spînu, Mark T D Cronin, Junpeng Lao, Anna Bal-Price, Ivana Campia, Steven J Enoch, Judith C Madden, Liadys Mora Lagares, Marjana Novič, David Pamies and 3 more

Open access · hybridAbstract read
In one paragraph

Article in Computational toxicology (Amsterdam, Netherlands), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 31 citations in OpenAlex.

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  14. A matter of trust: Learning lessons about causality will make qAOPs credible.Computational toxicology (Amsterdam, Netherlands) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 7 institutions in 6 countries.

Nicoleta SpînuSchool of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, UK.
Mark T D CroninSchool of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, UK.
Junpeng LaoDepartment of Psychology, University of Fribourg, Fribourg CH-1700, Switzerland.
Anna Bal-PriceEuropean Commission, Joint Research Centre (JRC), Ispra, Italy.
Ivana CampiaEuropean Commission, Joint Research Centre (JRC), Ispra, Italy.
Steven J EnochSchool of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, UK.
Judith C MaddenSchool of Pharmacy and Biomolecular Sciences, Liverpool John Moores University, Byrom Street, Liverpool L3 3AF, UK.
Liadys Mora LagaresJožef Stefan International Postgraduate School, 1000 Ljubljana, Slovenia.
Marjana NovičTheory Department, Laboratory for Cheminformatics, National Institute of Chemistry, 1000 Ljubljana, Slovenia.
David PamiesDepartment of Biomedical Science, University of Lausanne, Lausanne, Vaud, Switzerland.
Stefan ScholzHelmholtz-Centre for Environmental Research - UFZ, Department of Bioanalytical Ecotoxicology, Permoserstrasse 15, 04318 Leipzig, Germany.
Daniel L VilleneuveUS Environmental Protection Agency, Great Lakes Toxicology and Ecology Division, Duluth, MN 55804, MN, USA.
Andrew P WorthEuropean Commission, Joint Research Centre (JRC), Ispra, Italy.
Liverpool John Moores University · GBJoint Research Centre · ITNational Institute of Chemistry · SIEnvironmental Protection Agency · USHelmholtz Centre for Environmental Research · DESwiss Centre for Applied Human ToxicologyUniversity of Fribourg · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a century where toxicology and chemical risk assessment are embracing alternative methods to animal testing, there is an opportunity to understand the causal factors of neurodevelopmental disorders such as learning and memory disabilities in children, as a foundation to predict adverse effects. New testing paradigms, along with the advances in probabilistic modelling, can help with the formulation of mechanistically-driven hypotheses on how exposure to environmental chemicals could potentially lead to developmental neurotoxicity (DNT). This investigation aimed to develop a Bayesian hierarchical model of a simplified AOP network for DNT. The model predicted the probability that a compound induces each of three selected common key events (CKEs) of the simplified AOP network and the adverse outcome (AO) of DNT, taking into account correlations and causal relations informed by the key event relationships (KERs). A dataset of 88 compounds representing pharmaceuticals, industrial chemicals and pesticides was compiled including physicochemical properties as well as

Indexed as

ADMET, Absorption, distribution, metabolism, excretion, and toxicityAdverse Outcome PathwayAO, Adverse outcomeAOP, Adverse outcome pathwayBayesian hierarchical modelBBB, Blood-brain-barrierBDNF, Brain-derived neurotrophic factorCAS RN, Chemical Abstracts Service Registry NumberCI, Credible interval CKE, Common key eventCNS, Central nervous systemCommon Key EventCRA, Chemical risk assessmentDAG, Directed acyclic graphDevelopmental NeurotoxicityDNT, Developmental neurotoxicityDTXSID, The US EPA Comptox Chemical Dashboard substance identifierEC, Effective concentrationHDI, Highest density intervalIATA, Integrated Approaches to Testing and AssessmentKE, Key eventKER, Key event relationshipLDH, Lactate dehydrogenaseMCMC, Markov chain Monte CarloMIE, Molecular initiating eventNAM, New approach methodologyNew Approach MethodologyOECD, Organisation for Economic Cooperation and DevelopmentPBK, Physiologically-based kineticP-gp, P-glycoproteinqAOP, Quantitative adverse outcome pathwayQSAR, Quantitative structure-activity relationshipSMILES, Simplified molecular input line entry system

Identifiers

PMID35211661
PMCPMC8857173
OpenAlexW4200327182

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.