Evidence map›Paper›PMID 35210454›Full record

ArticleNature communications2022

Fast custom wavelet analysis technique for single molecule detection and identification.

Vahid Ganjalizadeh, Gopikrishnan G Meena, Thomas A Wall, Matthew A Stott, Aaron R Hawkins, Holger Schmidt

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
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  7. Automated Optofluidic Analysis of Single Extracellular Vesicles for Organoid Culture Monitoring.IEEE journal of selected topics in quantum electronics : a publication of the IEEE Lasers and Electro-optics Society
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Vahid GanjalizadehSchool of Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.ORCID 0000-0002-8768-3654
Gopikrishnan G MeenaSchool of Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA.ORCID 0000-0002-5995-6264
Thomas A WallElectrical and Computer Engineering Department, Brigham Young University, Provo, UT, 84602, USA.
Matthew A StottElectrical and Computer Engineering Department, Brigham Young University, Provo, UT, 84602, USA.
Aaron R HawkinsElectrical and Computer Engineering Department, Brigham Young University, Provo, UT, 84602, USA.
Holger SchmidtSchool of Engineering, University of California, Santa Cruz, 1156 High Street, Santa Cruz, CA, 95064, USA. hschmidt@soe.ucsc.edu.

Funding

Multiplexed, Non-Amplified, Nucleic Acid-Based Identification of Multidrug Resistant Pathogens Using an Integrated Optofluidic PlatformR01AI116989 · NIAID · BRIGHAM YOUNG UNIVERSITY · PI HAWKINS, AARON R., PITT, WILLIAM G · 2015 to 2019
$5.4M
Nanopore-based multi-target analysis of Zika virus infectionR01EB028608 · NIBIB · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI SCHMIDT, HOLGER · 2019 to 2022
$2.7M
NIAID NIH HHS R01 AI116989NIBIB NIH HHS R01 EB028608
6 · The paper itself

Abstract

Many sensors operate by detecting and identifying individual events in a time-dependent signal which is challenging if signals are weak and background noise is present. We introduce a powerful, fast, and robust signal analysis technique based on a massively parallel continuous wavelet transform (CWT) algorithm. The superiority of this approach is demonstrated with fluorescence signals from a chip-based, optofluidic single particle sensor. The technique is more accurate than simple peak-finding algorithms and several orders of magnitude faster than existing CWT methods, allowing for real-time data analysis during sensing for the first time. Performance is further increased by applying a custom wavelet to multi-peak signals as demonstrated using amplification-free detection of single bacterial DNAs. A 4x increase in detection rate, a 6x improved error rate, and the ability for extraction of experimental parameters are demonstrated. This cluster-based CWT analysis will enable high-performance, real-time sensing when signal-to-noise is hardware limited, for instance with low-cost sensors in point of care environments.

Indexed as

AlgorithmsWavelet AnalysisSignal Processing, Computer-Assisted

Identifiers

PMID35210454
PMCPMC8873225

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.