Evidence map›Paper›PMID 35208691›Full record

ArticleMicroorganisms2022

inPOSE: A Flexible Toolbox for Chromosomal Cloning and Amplification of Bacterial Transgenes.

Ranti Dev Shukla, Ágnes Zvara, Ákos Avramucz, Alona Yu Biketova, Akos Nyerges, László G Puskás, Tamás Fehér

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Stability of a MutualisticEngineering in life sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Ranti Dev ShuklaSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.
Ágnes ZvaraLaboratory for Functional Genomics, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.
Ákos AvramuczSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.
Alona Yu BiketovaSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.ORCID 0000-0003-0801-0660
Akos NyergesSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.ORCID 0000-0002-1581-490X
László G PuskásLaboratory for Functional Genomics, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.
Tamás FehérSynthetic and Systems Biology Unit, Institute of Biochemistry, Biological Research Centre of the Eötvös Lóránd Research Network, H-6726 Szeged, Hungary.ORCID 0000-0001-9318-3640
HUN-REN Szegedi Biológiai Kutatóközpont · HUHarvard University · USRoyal Botanic Gardens, Kew · GBUniversity of Szeged · HU

Funding

European Union GINOP-2.3.2-15-2016-00001Ministry of Human Capacities Biotechnology National Laboratory GrantNational Research, Development and Innovation Office 2020-1.1.6-JÖVŐ-2021-00003National Research, Development and Innovation Office K119298
6 · The paper itself

Abstract

Cloning the genes and operons encoding heterologous functions in bacterial hosts is now almost exclusively carried out using plasmid vectors. This has multiple drawbacks, including the need for constant selection and variation in copy numbers. The chromosomal integration of transgenes has always offered a viable alternative; however, to date, it has been of limited use due to its tedious nature and often being limited to a single copy. We introduce here a strategy that uses bacterial insertion sequences, which are the simplest autonomous transposable elements to insert and amplify genetic cargo into a bacterial chromosome. Transgene insertion can take place either as transposition or homologous recombination, and copy number amplification is achieved using controlled copy-paste transposition. We display the successful use of IS

Indexed as

chromosomal gene cloninggenome editinginsertion sequencelambda-Red-mediated recombinationmobile elementreplicative transpositionselection-free maintenancetransgene expression

Identifiers

PMID35208691
PMCPMC8875745
OpenAlexW4220893990

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.