Evidence map›Paper›PMID 35205395›Full record

ArticleGenes2022

Identification of Genomic Regions Associated with Agronomic and Disease Resistance Traits in a Large Set of Multiple DH Populations.

Kassahun Sadessa, Yoseph Beyene, Beatrice E Ifie, L M Suresh, Michael S Olsen, Veronica Ogugo, Dagne Wegary, Pangirayi Tongoona, Eric Danquah, Samuel Kwame Offei and 2 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 3 countries.

Kassahun SadessaEthiopian Institute of Agricultural Research (EIAR), Ambo Agricultural Research Center, Ambo P.O. Box 37, West Shoa, Ethiopia.
Yoseph BeyeneInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.
Beatrice E IfieWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, Legon, P.O. Box LG23, Accra 00233, Ghana.ORCID 0000-0001-9219-7477
L M SureshInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.
Michael S OlsenInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.
Veronica OgugoInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.
Dagne WegaryInternational Maize and Wheat Improvement Center (CIMMYT), 12.5 KM Peg, Harare P.O. Box MP163, Zimbabwe.ORCID 0000-0003-2301-4440
Pangirayi TongoonaWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, Legon, P.O. Box LG23, Accra 00233, Ghana.
Eric DanquahWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, Legon, P.O. Box LG23, Accra 00233, Ghana.ORCID 0000-0002-7870-0432
Samuel Kwame OffeiWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, Legon, P.O. Box LG23, Accra 00233, Ghana.
Boddupalli M PrasannaInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.ORCID 0000-0002-5761-2273
Manje GowdaInternational Maize and Wheat Improvement Center (CIMMYT), ICRAF House, P.O. Box 1041-00621, Nairobi 00100, Kenya.ORCID 0000-0003-4434-6364
International Maize and Wheat Improvement Center · KEUniversity of Ghana · GH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Breeding maize lines with the improved level of desired agronomic traits under optimum and drought conditions as well as increased levels of resistance to several diseases such as maize lethal necrosis (MLN) is one of the most sustainable approaches for the sub-Saharan African region. In this study, 879 doubled haploid (DH) lines derived from 26 biparental populations were evaluated under artificial inoculation of MLN, as well as under well-watered (WW) and water-stressed (WS) conditions for grain yield and other agronomic traits. All DH lines were used for analyses of genotypic variability, association studies, and genomic predictions for the grain yield and other yield-related traits. Genome-wide association study (GWAS) using a mixed linear FarmCPU model identified SNPs associated with the studied traits i.e., about seven and eight SNPs for the grain yield; 16 and 12 for anthesis date; seven and eight for anthesis silking interval; 14 and 5 for both ear and plant height; and 15 and 5 for moisture under both WW and WS environments, respectively. Similarly, about 13 and 11 SNPs associated with gray leaf spot and turcicum leaf blight were identified. Eleven SNPs associated with senescence under WS management that had depicted drought-stress-tolerant QTLs were identified. Under MLN artificial inoculation, a total of 12 and 10 SNPs associated with MLN disease severity and AUDPC traits, respectively, were identified. Genomic prediction under WW, WS, and MLN disease artificial inoculation revealed moderate-to-high prediction accuracy. The findings of this study provide useful information on understanding the genetic basis for the MLN resistance, grain yield, and other agronomic traits under MLN artificial inoculation, WW, and WS conditions. Therefore, the obtained information can be used for further validation and developing functional molecular markers for marker-assisted selection and for implementing genomic prediction to develop superior elite lines.

Indexed as

Disease ResistanceGenome-Wide Association StudyEdible GrainHaploidyPhenotypePlant BreedingZea maysgenome-wide association studygenomic predictiongenotyping by sequencingmaize lethal necrosiswater stresswell-watered

Identifiers

PMID35205395
PMCPMC8872035
OpenAlexW4213153844

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.