Evidence map›Paper›PMID 35204796›Full record

ArticleBiomolecules2022

Differences in Medium-Induced Conformational Plasticity Presumably Underlie Different Cytotoxic Activity of Ricin and Viscumin.

Pavel Volynsky, Diana Maltseva, Valentin Tabakmakher, Eduard V Bocharov, Maria Raygorodskaya, Galina Zakharova, Elena Britikova, Alexander Tonevitsky, Roman Efremov

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 63% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Pavel VolynskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya Str. 16/10, 117997 Moscow, Russia.ORCID 0000-0002-0471-4188
Diana MaltsevaInternational Laboratory of Microphysiological Systems, Faculty of Biology and Biotechnology, National Research University Higher School of Economics, Myasnitskaya ul. 20, 101000 Moscow, Russia.ORCID 0000-0002-4960-5348
Valentin TabakmakherShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya Str. 16/10, 117997 Moscow, Russia.ORCID 0000-0002-6588-1561
Eduard V BocharovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya Str. 16/10, 117997 Moscow, Russia.
Maria RaygorodskayaScientific Research Center Bioclinicum, Ugreshskaya Str. 2/85, 115088 Moscow, Russia.
Galina ZakharovaScientific Research Center Bioclinicum, Ugreshskaya Str. 2/85, 115088 Moscow, Russia.
Elena BritikovaInstitute of Bioorganic Chemistry NASB, Kuprevich St. 5, 220141 Minsk, Belarus.
Alexander TonevitskyShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya Str. 16/10, 117997 Moscow, Russia.
Roman EfremovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Miklukho-Maklaya Str. 16/10, 117997 Moscow, Russia.
National Research University Higher School of Economics · RUBioClinicum (Russia) · RUFar Eastern Federal University · RUInstitute of Bioorganic Chemistry · RUInstitute of Bioorganic Chemistry · BYMoscow Institute of Physics and Technology · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structurally similar catalytic subunits A of ricin (RTA) and viscumin (MLA) exhibit cytotoxic activity through ribosome inactivation. Ricin is more cytotoxic than viscumin, although the molecular mechanisms behind this difference are still poorly understood. To shed more light on this problem, we used a combined biochemical/molecular modeling approach to assess possible relationships between the activity of toxins and their structural/dynamic properties. Based on bioassay measurements, it was suggested that the differences in activity are associated with the ability of RTA and MLA to undergo structural/hydrophobic rearrangements during trafficking through the endoplasmic reticulum (ER) membrane. Molecular dynamics simulations and surface hydrophobicity mapping of both proteins in different media showed that RTA rearranges its structure in a membrane-like environment much more efficiently than MLA. Their refolded states also drastically differ in terms of hydrophobic organization. We assume that the higher conformational plasticity of RTA is favorable for the ER-mediated translocation pathway, which leads to a higher rate of toxin penetration into the cytoplasm.

Indexed as

RicinToxins, BiologicalEndoplasmic ReticulumRibosome Inactivating Proteins, Type 2mistletoe lectin IRibosome Inactivating Proteins, Type 2RicinToxins, Biologicalmedium effects on protein structuremembrane trafficking of proteinsmolecular dynamicsprotein–membrane interactionstype II ribosome inactivating proteins

Identifiers

PMID35204796
PMCPMC8961613
OpenAlexW4213330830

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.