Evidence map›Paper›PMID 35204504›Full record

ArticleDiagnostics (Basel, Switzerland)2022

Automatic Left Ventricle Segmentation from Short-Axis Cardiac MRI Images Based on Fully Convolutional Neural Network.

Zakarya Farea Shaaf, Muhammad Mahadi Abdul Jamil, Radzi Ambar, Ahmed Abdu Alattab, Anwar Ali Yahya, Yousef Asiri

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 26 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Zakarya Farea ShaafFaculty of Electrical and Electronic Engineering, Universiti Tun Hussein Onn Malaysia, Parit Raja, Batu Pahat 86400, Johor, Malaysia.
Muhammad Mahadi Abdul JamilFaculty of Electrical and Electronic Engineering, Universiti Tun Hussein Onn Malaysia, Parit Raja, Batu Pahat 86400, Johor, Malaysia.
Radzi AmbarFaculty of Electrical and Electronic Engineering, Universiti Tun Hussein Onn Malaysia, Parit Raja, Batu Pahat 86400, Johor, Malaysia.ORCID 0000-0003-0922-7685
Ahmed Abdu AlattabDepartment of Computer Science, College of Science and Arts, Sharurah, Najran University, Najran 61441, Saudi Arabia.
Anwar Ali YahyaDepartment of Computer Science, Faculty of Computer Science and Information Systems, Thamar University, Dhamar 87246, Yemen.
Yousef AsiriDepartment of Computer Science, College of Computer Science and Information Systems, Najran University, Najran 61441, Saudi Arabia.ORCID 0000-0001-7955-4468
Tun Hussein Onn University of Malaysia · MYThamar University · YENajran University · SA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLeft ventricle (LV) segmentation using a cardiac magnetic resonance imaging (MRI) dataset is critical for evaluating global and regional cardiac functions and diagnosing cardiovascular diseases. LV clinical metrics such as LV volume, LV mass and ejection fraction (EF) are frequently extracted based on the LV segmentation from short-axis MRI images. Manual segmentation to assess such functions is tedious and time-consuming for medical experts to diagnose cardiac pathologies. Therefore, a fully automated LV segmentation technique is required to assist medical experts in working more efficiently.

methodThis paper proposes a fully convolutional network (FCN) architecture for automatic LV segmentation from short-axis MRI images. Several experiments were conducted in the training phase to compare the performance of the network and the U-Net model with various hyper-parameters, including optimization algorithms, epochs, learning rate, and mini-batch size. In addition, a class weighting method was introduced to avoid having a high imbalance of pixels in the classes of image's labels since the number of background pixels was significantly higher than the number of LV and myocardium pixels. Furthermore, effective image conversion with pixel normalization was applied to obtain exact features representing target organs (LV and myocardium). The segmentation models were trained and tested on a public dataset, namely the evaluation of myocardial infarction from the delayed-enhancement cardiac MRI (EMIDEC) dataset.

resultsThe dice metric, Jaccard index, sensitivity, and specificity were used to evaluate the network's performance, with values of 0.93, 0.87, 0.98, and 0.94, respectively. Based on the experimental results, the proposed network outperforms the standard U-Net model and is an advanced fully automated method in terms of segmentation performance.

conclusionThis proposed method is applicable in clinical practice for doctors to diagnose cardiac diseases from short-axis MRI images.

Indexed as

cardiac short-axis MRIfully convolutional networkleft ventricle segmentationmedical image processingpixel weights balancing

Identifiers

PMID35204504
PMCPMC8871002
OpenAlexW4210588087

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.