Evidence map›Paper›PMID 35203112›Full record

ArticleEmerging infectious diseases2022

Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India.

Jayna Raghwani, Louis du Plessis, John T McCrone, Sarah C Hill, Kris V Parag, Julien Thézé, Dinesh Kumar, Apurva Puvar, Ramesh Pandit, Oliver G Pybus and 3 more

Abstract read
In one paragraph

Article in Emerging infectious diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Modeling COVID-19 Transmission Dynamics: A Bibliometric Review.International journal of environmental research and public health · 2022
    Review
  7. Global disparities in SARS-CoV-2 genomic surveillance.medRxiv : the preprint server for health sciences · 2021
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Jayna Raghwani
Louis du Plessis
John T McCrone
Sarah C Hill
Kris V Parag
Julien Thézé
Dinesh Kumar
Apurva Puvar
Ramesh Pandit
Oliver G Pybus
Guillaume Fournié
Madhvi Joshi
Chaitanya Joshi

Funding

Medical Research Council MR/R015600/1Wellcome TrustWellcome Trust 220414/Z/20/Z
6 · The paper itself

Abstract

Limited genomic sampling in many high-incidence countries has impeded studies of severe respiratory syndrome coronavirus 2 (SARS-CoV-2) genomic epidemiology. Consequently, critical questions remain about the generation and global distribution of virus genetic diversity. We investigated SARS-CoV-2 transmission dynamics in Gujarat, India, during the state's first epidemic wave to shed light on spread of the virus in one of the regions hardest hit by the pandemic. By integrating case data and 434 whole-genome sequences sampled across 20 districts, we reconstructed the epidemic dynamics and spatial spread of SARS-CoV-2 in Gujarat. Our findings indicate global and regional connectivity and population density were major drivers of the Gujarat outbreak. We detected >100 virus lineage introductions, most of which appear to be associated with international travel. Within Gujarat, virus dissemination occurred predominantly from densely populated regions to geographically proximate locations that had low population density, suggesting that urban centers contributed disproportionately to virus spread.

Indexed as

COVID-19SARS-CoV-2Genome, ViralGenomicsHumansIndiaPhylogenycoronavirus diseasecoronavirusesCOVID-19genomic epidemiologyGujaratIndiaphylogeographyrespiratory infectionsSARS-CoV-2severe acute respiratory syndrome coronavirus 2transmission dynamicsvirusvirus transmissionzoonoses

Identifiers

PMID35203112
PMCPMC8962880

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.